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CG17162 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 5740457, updated on 4-Jan-2025

Summary

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Official Symbol
CG17162provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0039944
Locus tag
Dmel_CG17162
See related
AllianceGenome:FB:FBgn0039944
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-20Ea; CG40460; Dmel\CG17162; FBgn0058460
Summary
Is expressed in organism. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See CG17162 in Genome Data Viewer
Location:
20F4-20F4; 1-66 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (23084960..23096735, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) XHet NW_001848859.1 (63778..75553, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR43480 Neighboring gene suppressor of forked Neighboring gene pseudo

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Promoter-Proximal Chromatin Domain Insulator Protein BEAF Mediates Local and Long-Range Communication with a Transcription Factor and Directly Activates a Housekeeping Promoter in Drosophila. Dong Y, et al. Genetics, 2020 May. PMID 32179582, Free PMC Article
  2. The Wright stuff: reimagining path analysis reveals novel components of the sex determination hierarchy in Drosophila melanogaster. Fear JM, et al. BMC Syst Biol, 2015 Sep 4. PMID 26335107, Free PMC Article
  3. Molecular characterization of embryonic gonads by gene expression profiling in Drosophila melanogaster. Shigenobu S, et al. Proc Natl Acad Sci U S A, 2006 Sep 12. PMID 16950879, Free PMC Article
  4. An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination. Kanca O, et al. Elife, 2022 Jun 20. PMID 35723254, Free PMC Article
  5. Comprehensive Identification and Alternative Splicing of Microexons in Drosophila. Pang TL, et al. Front Genet, 2021. PMID 33859668, Free PMC Article

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

  • Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG17162-PB
CG17162-PC
CG17162-PD
CG17162-PE
CG17162-PF
CG17162-PG
CG17162-PH

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    23084960..23096735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001300719.1 → NP_001287648.1  uncharacterized protein Dmel_CG17162, isoform H [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001287648.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SYH8

  2. NM_001144067.1 → NP_001137539.1  uncharacterized protein Dmel_CG17162, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001137539.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SYH8

  3. NM_001111001.3 → NP_001104471.1  uncharacterized protein Dmel_CG17162, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001104471.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SYH8

  4. NM_001111002.3 → NP_001104472.1  uncharacterized protein Dmel_CG17162, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001104472.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SYH8

  5. NM_001111003.3 → NP_001104473.1  uncharacterized protein Dmel_CG17162, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001104473.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SYH8

  6. NM_001300718.1 → NP_001287647.1  uncharacterized protein Dmel_CG17162, isoform G [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001287647.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A021WW64

  7. NM_001111000.2 → NP_001104470.1  uncharacterized protein Dmel_CG17162, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001104470.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SYH8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A021WW64 A0A021WW64
Q8SYH8 Q8SYH8

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