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snoRNA:Or-CD12 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 5740674, updated on 11-Sep-2024

Summary

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Official Symbol
snoRNA:Or-CD12provided by FlyBase
Primary source
FLYBASE:FBgn0086068
Locus tag
Dmel_CR34697
See related
AllianceGenome:FB:FBgn0086068
Gene type
ncRNA
RNA name
snoRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR34697; Dmel\CR34697; DmOr_cd12(DmU24); DmU24; orphan CD12
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Genomic context

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See snoRNA:Or-CD12 in Genome Data Viewer
Location:
63B14-63B14; 3-6 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (3221350..3221427, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (3221350..3221427, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene gryzun Neighboring gene hobbit Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene neutral sphingomyelinase Neighboring gene Ribosomal protein L28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A computational search for box C/D snoRNA genes in the Drosophila melanogaster genome. Accardo MC, et al. Bioinformatics, 2004 Dec 12. PMID 15247100
  2. Comprehensive map of ribosomal 2'-O-methylation and C/D box snoRNAs in Drosophila melanogaster. Sklias A, et al. Nucleic Acids Res, 2024 Apr 12. PMID 38416577, Free PMC Article
  3. Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs. Huang ZP, et al. RNA, 2005 Aug. PMID 15987805, Free PMC Article
  4. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • snoRNA:Or-CD12-RA; Dmel\snoRNA:Or-CD12-RA; CR34697-RA; Dmel\CR34697-RA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    3221350..3221427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_003852.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
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