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22 head scaffolding protein [ Escherichia phage JS98 ]

Gene ID: 5783886, updated on 31-May-2023

Summary

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Gene symbol
22
Gene description
head scaffolding protein
Locus tag
EpJS98_gp171
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia phage JS98 (nat-host: Escherichia coli)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Straboviridae; Tevenvirinae; Dhakavirus
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Genomic context

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Sequence:
NC_010105.1 (103391..104206)

NC_010105.1Genomic Context describing neighboring genes Neighboring gene prohead Neighboring gene head scaffolding protein Neighboring gene head maturation protease Neighboring gene major head protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010105.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome analysis of phage JS98 defines a fourth major subgroup of T4-like phages in Escherichia coli. Zuber S, et al. J Bacteriol, 2007 Nov. PMID 17693496, Free PMC Article
  2. Comparative genomics of the T4-Like Escherichia coli phage JS98: implications for the evolution of T4 phages. Chibani-Chennoufi S, et al. J Bacteriol, 2004 Dec. PMID 15576776, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
head scaffolding protein
YP_001595300.1
  • gp22; structural virion protein; in bacteriophage T4 and related viruses, the virion is composed of head and tail components; capsid head is assembled on an initiator complex of gp20; the gp22-gp21 scaffold and the gp23 capsid protein are assembled onto the initiator; after the scaffold is completely surrounded by gp23 and gp24, the T4 prohead protease, gp21, degrades the scaffold

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_010105.1 Reference assembly

    Range
    103391..104206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_001595300.1 head scaffolding protein [Escherichia phage JS98]

    See identical proteins and their annotated locations for YP_001595300.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A858I4W3, Q5QBV0
    Conserved Domains (1) summary
    PHA02557
    Location:1 → 271
    22; prohead core protein; Provisional
Nucleotide Protein
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Molecular Biology Databases