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Vstm2b V-set and transmembrane domain containing 2B [ Mus musculus (house mouse) ]

Gene ID: 58188, updated on 27-Nov-2024

Summary

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Official Symbol
Vstm2bprovided by MGI
Official Full Name
V-set and transmembrane domain containing 2Bprovided by MGI
Primary source
MGI:MGI:1914525
See related
Ensembl:ENSMUSG00000039257 AllianceGenome:MGI:1914525
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2900093B09Rik
Summary
Predicted to be active in membrane. Is expressed in brain and spinal cord mantle layer. Orthologous to human VSTM2B (V-set and transmembrane domain containing 2B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in stomach adult (RPKM 77.8), CNS E18 (RPKM 26.6) and 10 other tissues See more
Orthologs
human all
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Genomic context

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See Vstm2b in Genome Data Viewer
Location:
7 B3; 7 27.88 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (40547614..40579468)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (40898011..40930044)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A230077H06 gene Neighboring gene predicted gene, 25784 Neighboring gene predicted gene, 51479 Neighboring gene RIKEN cDNA 4930433I11 gene Neighboring gene predicted gene, 38997 Neighboring gene STARR-seq mESC enhancer starr_18725

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Transcriptomic analysis and novel insights into lens fibre cell differentiation regulated by Gata3. Martynova E, et al. Open Biol, 2019 Dec. PMID 31847788, Free PMC Article
  2. Growth suppression of Escherichia coli by induction of expression of mammalian genes with transmembrane or ATPase domains. Inoue S, et al. Biochem Biophys Res Commun, 2000 Feb 16. PMID 10679242
  3. Expression of the immunoglobulin superfamily cell adhesion molecules in the developing spinal cord and dorsal root ganglion. Gu Z, et al. PLoS One, 2015. PMID 25826454, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
V-set and transmembrane domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418631.1 → NP_001405560.1  V-set and transmembrane domain-containing protein 2B isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC136717

  2. NM_001418632.1 → NP_001405561.1  V-set and transmembrane domain-containing protein 2B isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AC136717

  3. NM_001418634.1 → NP_001405563.1  V-set and transmembrane domain-containing protein 2B isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC136717
    UniProtKB/Swiss-Prot
    Q8CEK5, Q9JME9
    Related
    ENSMUSP00000044002.10, ENSMUST00000044705.12

  4. NM_001418635.1 → NP_001405564.1  V-set and transmembrane domain-containing protein 2B isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC136717

  5. NM_021387.4 → NP_067362.1  V-set and transmembrane domain-containing protein 2B isoform 1 precursor

    See identical proteins and their annotated locations for NP_067362.1

    Status: VALIDATED

    Source sequence(s)
    AC136717
    Consensus CDS
    CCDS21160.1
    UniProtKB/Swiss-Prot
    Q8CEK5, Q9JME9
    Related
    ENSMUSP00000146231.2, ENSMUST00000205845.2
    Conserved Domains (1) summary
    smart00410
    Location:34 → 148
    IG_like; Immunoglobulin like

RNA

  1. NR_184788.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC136717

  2. NR_184789.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC136717

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    40547614..40579468
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006541032.5 → XP_006541095.1  V-set and transmembrane domain-containing protein 2B isoform X2

    Conserved Domains (1) summary
    smart00409
    Location:34 → 178
    IG; Immunoglobulin
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9JME9.1 GenPept UniProtKB/Swiss-Prot:Q9JME9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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