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tnpA transposon Tn4555 protein TnpA [ Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 ]

Gene ID: 60061001, updated on 9-Jan-2025

Summary

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Gene symbol
tnpA
Gene description
transposon Tn4555 protein TnpA
Locus tag
HMPREF1534_RS04070
Gene type
protein coding
Organism
Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 (strain: DSM 17679, type-material: type strain of Bacteroides massiliensis)
Lineage
Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
Old locus tag
HMPREF1534_03132
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Genomic context

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NZ_KB905473.1Genomic Context describing neighboring genes Neighboring gene tyrosine-type recombinase/integrase Neighboring gene transposon Tn4555 protein TnpC Neighboring gene TIGR04150 pseudo-rSAM protein Neighboring gene peptidase domain-containing ABC transporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_KB905473.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic structure and transcriptional analysis of a mobilizable, antibiotic resistance transposon from Bacteroides. Tribble GD, et al. Plasmid, 1999 Jul. PMID 10413660
  2. The Bacteroides mobilizable transposon Tn4555 integrates by a site-specific recombination mechanism similar to that of the gram-positive bacterial element Tn916. Tribble GD, et al. J Bacteriol, 1997 Apr. PMID 9098073, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transposon Tn4555 protein TnpA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_KB905473.1 Reference assembly

    Range
    502111..503046 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_004292844.1 MULTISPECIES: transposon Tn4555 protein TnpA [Bacteria]

    See identical proteins and their annotated locations for WP_004292844.1

    UniProtKB/TrEMBL
    A0A078QTI2, A0A095Y9X1, A0A095ZGG1, A0A096AAB6, A0A096AYH6, A0A096BUW6, A0A099BY00, A0A174SVN2, A0A174WZ62, A0A223HQN2, A0A246ERV0, A0A250KK26, A0A2K0XPE3, A0A2N6QP44, A0A373FU97, A0A373ZJ00, A0A374N2L0, A0A374TCY4, A0A3A5QTV1, A0A3A5SCS1, A0A3A5SL03, A0A3A6K7X2, A0A3D9A3Y3, A0A3E4N2G5, A0A3E4QJM4, A0A3E4VXF3, A0A3E4ZME2, A0A3S0RAG1, A0A412YPJ2, A0A413GBF2, A0A413ZPL3, A0A414M264, A0A415NDF6, A0A416GDG8, A0A4Y8V8L5, A0A5M5N4X3, A0A7C9LDW3, A0A8E1QYU1, A0A926IPK8, A0A930IKN7, A0AA46UCN5, A0AAD2TLG7, A0AAW6FJW2, A0AAX2F3X8, C3QZ33, D1VZX8, D1W3X2, D4VAE3, E1KQX9, E5V6U6, E5WUN7, F0H5X3, F7M2C2, F9DJM4, H1HIP2, I4Z9Q3, I9QDD5, O05722, U2LD23, U6RAR8
    Conserved Domains (2) summary
    pfam12728
    Location:58 → 108
    HTH_17; Helix-turn-helix domain
    cl02600
    Location:209 → 269
    HTH_MerR-SF; Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily
Nucleotide Protein
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