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ybaK Cys-tRNA(Pro) deacylase [ Propionibacterium freudenreichii ]

Gene ID: 61222157, updated on 15-Dec-2024

Summary

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Gene symbol
ybaK
Gene description
Cys-tRNA(Pro) deacylase
Locus tag
CR251_RS05420
Gene type
protein coding
Organism
Propionibacterium freudenreichii (isolate: PFRJS14)
Lineage
Bacteria; Bacillati; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Propionibacterium
Old locus tag
PFR_JS14_1078
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Genomic context

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Location:
chromosome: I

I - NZ_LT593929.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase III subunit alpha Neighboring gene hypothetical protein Neighboring gene DUF554 domain-containing protein Neighboring gene histidinol dehydrogenase Neighboring gene histidinol-phosphate transaminase

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_LT593929.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Aminoacyl-tRNA substrate and enzyme backbone atoms contribute to translational quality control by YbaK. Kumar S, et al. J Phys Chem B, 2013 Apr 25. PMID 23185990, Free PMC Article
  2. An isolated class II aminoacyl-tRNA synthetase insertion domain is functional in amino acid editing. Wong FC, et al. J Biol Chem, 2003 Dec 26. PMID 14530268
  3. Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase.YbaK.tRNA ternary complex. An S, et al. J Biol Chem, 2005 Oct 14. PMID 16087664
  4. Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications. Zhang H, et al. Proteins, 2000 Jul 1. PMID 10813833

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
Cys-tRNA(Pro) deacylase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_LT593929.1 Reference assembly

    Range
    1232530..1233048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_013161077.1 MULTISPECIES: Cys-tRNA(Pro) deacylase [Propionibacterium]

    See identical proteins and their annotated locations for WP_013161077.1

    UniProtKB/TrEMBL
    A0A068VRQ8, A0A0A8QGC2, D7GDU2
    Conserved Domains (1) summary
    cd00002
    Location:11 → 164
    YbaK_deacylase; This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) ...
Nucleotide Protein
Heading Accession and Version

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