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dmeR Ni(II)/Co(II)-sensing transcriptional repressor DmeR [ Agrobacterium pusense ]

Gene ID: 61454184, updated on 6-Jun-2024

Summary

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Gene symbol
dmeR
Gene description
Ni(II)/Co(II)-sensing transcriptional repressor DmeR
Locus tag
HQN82_RS02600
Gene type
protein coding
Organism
Agrobacterium pusense (strain: 76, nat-host: Fusarium oxysporum f. sp. cucumerinum)
Lineage
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium
Old locus tag
HQN82_02600
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Genomic context

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Location:
chromosome: R76C1

R76C1 - NZ_CP053856.1Genomic Context describing neighboring genes Neighboring gene helix-turn-helix domain-containing protein Neighboring gene hypothetical protein Neighboring gene CDF family Co(II)/Ni(II) efflux transporter DmeF Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP053856.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulation of the Cobalt/Nickel Efflux Operon dmeRF in Agrobacterium tumefaciens and a Link between the Iron-Sensing Regulator RirA and Cobalt/Nickel Resistance. Dokpikul T, et al. Appl Environ Microbiol, 2016 Aug 1. PMID 27235438, Free PMC Article
  2. Functional and expression analysis of the metal-inducible dmeRF system from Rhizobium leguminosarum bv. viciae. Rubio-Sanz L, et al. Appl Environ Microbiol, 2013 Oct. PMID 23934501, Free PMC Article
  3. Complete Genome Sequence of the Sesbania Symbiont and Rice Growth-Promoting Endophyte Rhizobium sp. Strain IRBG74. Crook MB, et al. Genome Announc, 2013 Nov 21. PMID 24265489, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
Ni(II)/Co(II)-sensing transcriptional repressor DmeR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP053856.1 Reference assembly

    Range
    535470..535742
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_003509296.1 MULTISPECIES: Ni(II)/Co(II)-sensing transcriptional repressor DmeR [Pseudomonadota]

    See identical proteins and their annotated locations for WP_003509296.1

    UniProtKB/TrEMBL
    A0A037XSE9, A0A0X7ACV5, A0A1L9CW08, A0A1S7PX50, A0A1S7Q0J0, A0A1S7Q6F8, A0A1S7TNP1, A0A4S1HBF1, A0A4U6BCR5, A0A5D9D1U5, A0A822V4K2, A0A9W5B2W1, A0A9X0PP91, A0A9X3QX06, A0AA88F1F4, U4Q5G8
    Conserved Domains (1) summary
    cd10153
    Location:3 → 89
    RcnR-FrmR-like_DUF156; Transcriptional regulators RcnR and FrmR, and related domains; this domain family was previously known as part of DUF156
Nucleotide Protein
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