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RPL28 ribosomal protein L28 [ Homo sapiens (human) ]

Gene ID: 6158, updated on 27-Nov-2024

Summary

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Official Symbol
RPL28provided by HGNC
Official Full Name
ribosomal protein L28provided by HGNC
Primary source
HGNC:HGNC:10330
See related
Ensembl:ENSG00000108107 MIM:603638; AllianceGenome:HGNC:10330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
L28; eL28
Summary
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L28E family of ribosomal proteins. It is located in the cytoplasm. Variable expression of this gene in colorectal cancers compared to adjacent normal tissues has been observed, although no correlation between the level of expression and the severity of the disease has been found. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Alternative splicing results in multiple transcript variants encoding distinct isoforms.[provided by RefSeq, Oct 2008]
Expression
Ubiquitous expression in spleen (RPKM 70.1), ovary (RPKM 68.3) and 25 other tissues See more
Orthologs
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Genomic context

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See RPL28 in Genome Data Viewer
Location:
19q13.42
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (55385932..55403342)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (58481406..58498795)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (55897300..55914710)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55890663-55891163 Neighboring gene transmembrane protein 190 Neighboring gene transmembrane protein 238 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11027 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:55895260-55896222 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15093 Neighboring gene microRNA 6805 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15094 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55915190-55915690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55915691-55916191 Neighboring gene small nucleolar RNA, C/D box 157 Neighboring gene ubiquitin conjugating enzyme E2 S Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:55918619-55919132 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11030 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11031 Neighboring gene Sharpr-MPRA regulatory region 8373 Neighboring gene uncharacterized LOC105372462 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15095 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15096 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55930479-55931048 Neighboring gene MPRA-validated peak3567 silencer Neighboring gene shisa family member 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11032 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55953359-55953987

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Germline variability and tumor expression level of ribosomal protein gene RPL28 are associated with survival of metastatic colorectal cancer patients. Labriet A, et al. Sci Rep, 2019 Sep 10. PMID 31506518, Free PMC Article
  2. Identification of Novel Tau Interactions with Endoplasmic Reticulum Proteins in Alzheimer's Disease Brain. Meier S, et al. J Alzheimers Dis, 2015. PMID 26402096, Free PMC Article
  3. Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance. Wei J, et al. Mol Cell, 2019 Mar 21. PMID 30712990, Free PMC Article
  4. Differential expression of ribosomal proteins in human normal and neoplastic colorectum. Kasai H, et al. J Histochem Cytochem, 2003 May. PMID 12704204
  5. Characterization of the functional gene and several processed pseudogenes in the human triosephosphate isomerase gene family. Brown JR, et al. Mol Cell Biol, 1985 Jul. PMID 4022011, Free PMC Article

See all (232) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Germline variability and tumor expression level of ribosomal protein gene RPL28 are associated with survival of metastatic colorectal cancer patients.
    Title: Germline variability and tumor expression level of ribosomal protein gene RPL28 are associated with survival of metastatic colorectal cancer patients.
  2. 60S ribosomal proteins L6 (RPL6) and RPL28, which are adjacent on the ribosome, play opposite roles in generating an influenza A virus-encoded peptide. Depleting RPL6 decreases ubiquitin-dependent peptide presentation, whereas depleting RPL28 increases ubiquitin-dependent and -independent peptide presentation.
    Title: Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance.
  3. Observational study of gene-disease association. (HuGE Navigator)
    Title: Sequential use of transcriptional profiling, expression quantitative trait mapping, and gene association implicates MMP20 in human kidney aging.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

HIV-1 interactions

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Protein interactions

Protein Gene Interaction Pubs
Pr55(Gag) gag HIV-1 Gag interacts with RPL28 as demonstrated by proximity dependent biotinylation proteomics PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ43307

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding HDA PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural constituent of ribosome IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome NAS
Non-traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IC
Inferred by Curator
more info
 PubMed 
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in translation NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cell body IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm NAS
Non-traceable Author Statement
more info
 PubMed 
located_in cytoplasmic ribonucleoprotein granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
  
part_of cytosolic large ribosomal subunit HDA PubMed 
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
 PubMed 
part_of cytosolic large ribosomal subunit IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in cytosolic ribosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in dendrite IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular exosome HDA PubMed 
located_in membrane HDA PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
large ribosomal subunit protein eL28
Names
60S ribosomal protein L28
NP_000982.2
NP_001129606.1
NP_001129607.1
NP_001129608.1
NP_001129609.1
NP_001350626.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_000991.5 → NP_000982.2  large ribosomal subunit protein eL28 isoform 2

    See identical proteins and their annotated locations for NP_000982.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks a stop-codon-containing segment in the 3' coding region, compared to variant 1. The encoded protein (isoform 2) has a distinct and shorter C-terminus when compared to isoform 1.
    Source sequence(s)
    AC020922, AK311760, BC011582
    Consensus CDS
    CCDS12924.1
    UniProtKB/Swiss-Prot
    B2R4A6, B4DEP9, C9JB50, E9PB24, G5E9L2, P46779, Q6IAY0, Q96FX1, Q9BWQ0
    Related
    ENSP00000342787.3, ENST00000344063.7
    Conserved Domains (1) summary
    pfam01778
    Location:5 → 119
    Ribosomal_L28e; Ribosomal L28e protein family

  2. NM_001136134.1 → NP_001129606.1  large ribosomal subunit protein eL28 isoform 1

    See identical proteins and their annotated locations for NP_001129606.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes isoform 1.
    Source sequence(s)
    AC020922, AK293736, BC011582
    Consensus CDS
    CCDS46190.1
    UniProtKB/Swiss-Prot
    P46779
    Related
    ENSP00000453029.1, ENST00000560583.5
    Conserved Domains (1) summary
    pfam01778
    Location:5 → 109
    Ribosomal_L28e; Ribosomal L28e protein family

  3. NM_001136135.2 → NP_001129607.1  large ribosomal subunit protein eL28 isoform 3

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks a stop-codon-containing segment in the 3' coding region, compared to variant 1. The encoded protein (isoform 3) has a distinct and longer C-terminus when compared to isoform 1.
    Source sequence(s)
    AC020922, BC011582, BP227047
    Consensus CDS
    CCDS46189.1
    UniProtKB/Swiss-Prot
    P46779
    Related
    ENSP00000452909.1, ENST00000558815.5
    Conserved Domains (1) summary
    pfam01778
    Location:5 → 112
    Ribosomal_L28e; Ribosomal L28e protein family

  4. NM_001136136.1 → NP_001129608.1  large ribosomal subunit protein eL28 isoform 4

    See identical proteins and their annotated locations for NP_001129608.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 3' UTR and has multiple coding region differences, compared to variant 1. The encoded protein (isoform 4) has a distinct and shorter C-terminus when compared to isoform 1.
    Source sequence(s)
    DA333143, DA820669
    Consensus CDS
    CCDS46192.1
    UniProtKB/TrEMBL
    Q59F34
    Related
    ENSP00000400596.2, ENST00000431533.6
    Conserved Domains (1) summary
    pfam01778
    Location:5 → 66
    Ribosomal_L28e; Ribosomal L28e protein family

  5. NM_001136137.1 → NP_001129609.1  large ribosomal subunit protein eL28 isoform 5

    See identical proteins and their annotated locations for NP_001129609.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) differs in the 3' UTR and has multiple coding region differences, compared to variant 1. The encoded protein (isoform 5) has a distinct and shorter C-terminus when compared to isoform 1.
    Source sequence(s)
    BM702093, DA092122
    Consensus CDS
    CCDS46191.1
    UniProtKB/Swiss-Prot
    P46779
    Related
    ENSP00000391665.2, ENST00000428193.6
    Conserved Domains (1) summary
    pfam01778
    Location:5 → 68
    Ribosomal_L28e; Ribosomal L28e protein family

  6. NM_001363697.1 → NP_001350626.1  large ribosomal subunit protein eL28 isoform 6

    Status: REVIEWED

    Source sequence(s)
    AA579944, AK311760, BF686026, BG716117, DB540276
    Consensus CDS
    CCDS86809.1
    UniProtKB/TrEMBL
    H0YKD8
    Related
    ENSP00000452763.1, ENST00000560055.5
    Conserved Domains (1) summary
    pfam01778
    Location:5 → 110
    Ribosomal_L28e; Ribosomal L28e protein family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    55385932..55403342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    58481406..58498795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P46779.3 GenPept UniProtKB/Swiss-Prot:P46779

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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