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rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [ Pseudomonas chlororaphis ]

Gene ID: 61652548, updated on 3-Dec-2024

Summary

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Gene symbol
rlmN
Gene description
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
Locus tag
HLB40_RS24250
Gene type
protein coding
Organism
Pseudomonas chlororaphis (strain: qlu-1)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
Old locus tag
HLB40_24250
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Genomic context

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NZ_CP061079.1Genomic Context describing neighboring genes Neighboring gene RodZ family helix-turn-helix domain-containing protein Neighboring gene type IV pilus biogenesis/stability protein PilW Neighboring gene nucleoside-diphosphate kinase Neighboring gene Fe-S cluster assembly protein IscX

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP061079.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome Sequence of Pseudomonas chlororaphis Strain PA23. Loewen PC, et al. Genome Announc, 2014 Jul 17. PMID 25035328, Free PMC Article
  2. The methyltransferase YfgB/RlmN is responsible for modification of adenosine 2503 in 23S rRNA. Toh SM, et al. RNA, 2008 Jan. PMID 18025251, Free PMC Article
  3. Identification of a plasmid-borne chloramphenicol-florfenicol resistance gene in Staphylococcus sciuri. Schwarz S, et al. Antimicrob Agents Chemother, 2000 Sep. PMID 10952608, Free PMC Article
  4. Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods. Sofia HJ, et al. Nucleic Acids Res, 2001 Mar 1. PMID 11222759, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
WP_007929531.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP061079.1 Reference assembly

    Range
    5517525..5518673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_007929531.1 MULTISPECIES: 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [Pseudomonas]

    See identical proteins and their annotated locations for WP_007929531.1

    UniProtKB/TrEMBL
    A0A0E1EA97, A0A1H3RBJ8, A0A554PGH8, A0AAD0BLI5, A0AAD1E8X6, A0AAJ0ZKQ5, A0AAX0MPC0, A0AAX2DZQ1
    Conserved Domains (1) summary
    cl18962
    Location:3 → 359
    Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
Nucleotide Protein
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