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SHOC1 shortage in chiasmata 1 [ Bos taurus (domestic cattle) ]

Gene ID: 617568, updated on 29-Jan-2025

Summary

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Official Symbol
SHOC1provided by VGNC
Official Full Name
shortage in chiasmata 1provided by VGNC
Primary source
VGNC:VGNC:52743
See related
Ensembl:ENSBTAG00000044004
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
C8H9orf84
Orthologs
human mouse all
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Genomic context

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See SHOC1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (101092571..101177345, complement)

Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C25 Neighboring gene G protein subunit gamma 10 Neighboring gene uncharacterized LOC132346008 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene uncharacterized LOC132346009 Neighboring gene microRNA mir-7863

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in resolution of meiotic recombination intermediates IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in condensed nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein shortage in chiasmata 1 ortholog
Names
chromosome 8 C9orf84 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    101092571..101177345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059889524.1 → XP_059745507.1  protein shortage in chiasmata 1 ortholog

    UniProtKB/TrEMBL
    A0A3Q1MPI5
    Related
    ENSBTAP00070041604.1, ENSBTAT00070068109.1
Nucleotide Protein Strain
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