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Garin4 golgi associated RAB2 interactor family member 4 [ Mus musculus (house mouse) ]

Gene ID: 619288, updated on 27-Nov-2024

Summary

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Official Symbol
Garin4provided by MGI
Official Full Name
golgi associated RAB2 interactor family member 4provided by MGI
Primary source
MGI:MGI:3588202
See related
Ensembl:ENSMUSG00000091017 AllianceGenome:MGI:3588202
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam71a; GARI-L4; 4933417M04Rik
Summary
Predicted to be involved in Golgi organization. Predicted to be located in Golgi apparatus. Orthologous to human GARIN4 (golgi associated RAB2 interactor family member 4). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human all
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Genomic context

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See Garin4 in Genome Data Viewer
Location:
1 H6; 1 96.28 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (190894781..190897014, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (191162584..191164817, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31640 Neighboring gene STARR-seq mESC enhancer starr_03427 Neighboring gene predicted gene, 31696 Neighboring gene activating transcription factor 3 Neighboring gene STARR-positive B cell enhancer ABC_E4405 Neighboring gene STARR-seq mESC enhancer starr_03429 Neighboring gene STARR-positive B cell enhancer ABC_E2027 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:193017813-193017996 Neighboring gene STARR-positive B cell enhancer mm9_chr1:193021775-193022076 Neighboring gene RIKEN cDNA D730003I15 gene Neighboring gene STARR-positive B cell enhancer ABC_E1578

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Golgi associated RAB2 interactor protein family contributes to murine male fertility to various extents by assuring correct morphogenesis of sperm heads. Wang H, et al. PLoS Genet, 2024 Jun. PMID 38935810, Free PMC Article
  2. Large scale screening for novel rab effectors reveals unexpected broad Rab binding specificity. Fukuda M, et al. Mol Cell Proteomics, 2008 Jun. PMID 18256213
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in Golgi organization ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within cell morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
is_active_in sperm head IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
Golgi-associated RAB2 interactor protein 4
Names
Golgi-associated Rab2B interactor-like 4
family with sequence similarity 71, member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109759.1 → NP_001103229.1  Golgi-associated RAB2 interactor protein 4

    See identical proteins and their annotated locations for NP_001103229.1

    Status: VALIDATED

    Source sequence(s)
    AC138229, AK133412
    Consensus CDS
    CCDS48487.1
    UniProtKB/TrEMBL
    B7XG49
    Related
    ENSMUSP00000127945.2, ENSMUST00000171798.2
    Conserved Domains (1) summary
    pfam12480
    Location:122 → 193
    DUF3699; Protein of unknown function (DUF3699)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    190894781..190897014 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006991.1: Suppressed sequence

    Description
    NG_006991.1: This RefSeq was permanantly suppressed because it is now thought that this gene does encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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