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Gal3st2c galactose-3-O-sulfotransferase 2C [ Mus musculus (house mouse) ]

Gene ID: 619597, updated on 27-Nov-2024

Summary

Official Symbol
Gal3st2cprovided by MGI
Official Full Name
galactose-3-O-sulfotransferase 2Cprovided by MGI
Primary source
MGI:MGI:3646771
See related
Ensembl:ENSMUSG00000073608 AllianceGenome:MGI:3646771
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm219; Gm6086; EG619597
Summary
Predicted to enable galactose 3-O-sulfotransferase activity. Predicted to be involved in glycoprotein biosynthetic process. Orthologous to human GAL3ST2 (galactose-3-O-sulfotransferase 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in small intestine adult (RPKM 16.6), duodenum adult (RPKM 16.4) and 2 other tissues See more
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Genomic context

See Gal3st2c in Genome Data Viewer
Location:
1 D; 1 47.45 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (93918227..93939261)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (93990505..94011539)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene galactose-3-O-sulfotransferase 2B Neighboring gene D-2-hydroxyglutarate dehydrogenase pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr1:95931456-95931756 Neighboring gene sialidase 4 Neighboring gene programmed cell death 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables galactose 3-O-sulfotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables sulfotransferase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in glycoprotein biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
galactose-3-O-sulfotransferase 2C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039219.3NP_001034308.1  galactose-3-O-sulfotransferase 2C

    See identical proteins and their annotated locations for NP_001034308.1

    Status: VALIDATED

    Source sequence(s)
    AC167963, AK145447, CJ080564
    Consensus CDS
    CCDS48330.1
    UniProtKB/TrEMBL
    Q3ULK5, Q3UN22
    Related
    ENSMUSP00000095234.4, ENSMUST00000097632.5
    Conserved Domains (1) summary
    cl22970
    Location:33382
    Sulfotransfer_2; Sulfotransferase family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    93918227..93939261
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006529771.3XP_006529834.1  galactose-3-O-sulfotransferase 2C isoform X1

    See identical proteins and their annotated locations for XP_006529834.1

    UniProtKB/TrEMBL
    Q3ULK5, Q3UN22
    Conserved Domains (1) summary
    cl22970
    Location:33382
    Sulfotransfer_2; Sulfotransferase family