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A530040E14Rik RIKEN cDNA A530040E14 gene [ Mus musculus (house mouse) ]

Gene ID: 621875, updated on 22-Oct-2024

Summary

Official Symbol
A530040E14Rikprovided by MGI
Official Full Name
RIKEN cDNA A530040E14 geneprovided by MGI
Primary source
MGI:MGI:3612703
See related
Ensembl:ENSMUSG00000072109 AllianceGenome:MGI:3612703
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in thymus adult (RPKM 4.5), spleen adult (RPKM 3.8) and 14 other tissues See more
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Genomic context

See A530040E14Rik in Genome Data Viewer
Location:
1 C5; 1 43.45 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (85083814..85091759)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (85106093..85114038)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene Sp140 nuclear body protein pseudogene Neighboring gene Sp140 nuclear body protein pseudogene Neighboring gene Sp140 nuclear body protein like 1 Neighboring gene STARR-seq mESC enhancer starr_01538 Neighboring gene STARR-seq mESC enhancer starr_01539 Neighboring gene Sp140 nuclear body protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_01540 Neighboring gene STARR-seq mESC enhancer starr_01541 Neighboring gene predicted gene, 38510 Neighboring gene predicted gene, 53253 Neighboring gene STARR-seq mESC enhancer starr_01543 Neighboring gene STARR-positive B cell enhancer mm9_chr1:85203253-85203554 Neighboring gene predicted gene, 53568 Neighboring gene predicted pseudogene 7609

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Clone Names

  • AC167036.4

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_163968.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC167036
    Related
    ENSMUST00000162353.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    85083814..85091759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001037910.1: Suppressed sequence

    Description
    NM_001037910.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.