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RPS17P2 ribosomal protein S17 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 6219, updated on 17-Sep-2024

Summary

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Official Symbol
RPS17P2provided by HGNC
Official Full Name
ribosomal protein S17 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:10398
See related
Ensembl:ENSG00000197575 AllianceGenome:HGNC:10398
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS17A; RPS17L1; RPS17_5_604
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Genomic context

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See RPS17P2 in Genome Data Viewer
Location:
5q23.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (116716218..116716696)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (117228311..117228789)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (116051914..116052392)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene semaphorin 6A Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:115907796-115908577 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16259 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:115913215-115913850 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:115913851-115914484 Neighboring gene SEMA6A antisense RNA 2 Neighboring gene ribosomal protein S14 pseudogene 8 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:115964490-115965301 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22946 Neighboring gene NANOG hESC enhancer GRCh37_chr5:115975944-115976532 Neighboring gene Sharpr-MPRA regulatory region 8609 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:115996497-115996997 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22948 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:116040271-116040997 Neighboring gene long intergenic non-protein coding RNA 2214 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22951 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22952 Neighboring gene uncharacterized LOC105379133 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:116106593-116107255 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:116120461-116120698

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ribosomal protein gene sequences map to human chromosomes 5, 8, and 17. Nakamichi NN, et al. Somat Cell Mol Genet, 1986 May. PMID 3459254
  2. The transcriptionally active human ribosomal protein S17 gene. Chen IT, et al. Gene, 1988 Oct 15. PMID 3240863
  3. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • ribosomal protein S17-like 1
  • ribosomal protein S17a-like 1 (pseudogene)
  • ribosomal protein pseudogene S17a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_003033.5 

    Range
    101..579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    116716218..116716696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    117228311..117228789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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