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1700028E10Rik RIKEN cDNA 1700028E10 gene [ Mus musculus (house mouse) ]

Gene ID: 625175, updated on 17-Aug-2024

Summary

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Official Symbol
1700028E10Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700028E10 geneprovided by MGI
Primary source
MGI:MGI:1916713
See related
Ensembl:ENSMUSG00000097321 AllianceGenome:MGI:1916713
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm6561; A630054D14
Expression
Low expression observed in reference dataset See more
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Genomic context

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See 1700028E10Rik in Genome Data Viewer
Location:
5 G3; 5 90.02 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (151292140..151337548)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (151368675..151414083)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene StAR related lipid transfer domain containing 13 Neighboring gene RIKEN cDNA 5430435K18 gene Neighboring gene chromobox protein homolog 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_14974 Neighboring gene STARR-seq mESC enhancer starr_14976 Neighboring gene predicted gene 3704 Neighboring gene vomeronasal 2, receptor, pseudogene 25 Neighboring gene vomeronasal 2, receptor, pseudogene 26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045699.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript.
    Source sequence(s)
    AK042042, CD552865
    Related
    ENSMUST00000181114.6

  2. NR_045700.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has alternate 3' exons, compared to variant 1.
    Source sequence(s)
    AK006454, CD552865
    Related
    ENSMUST00000202024.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    151292140..151337548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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