Ssxb14 SSX member B14 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Ssxb14provided by MGI
Official Full Name: SSX member B14provided by MGI
Primary source: MGI:MGI:3647394
See related: Ensembl:ENSMUSG00000079699 AllianceGenome:MGI:3647394
Gene type: protein coding
RefSeq status: INFERRED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Gm6592; EG625480
Summary: Predicted to be located in sperm flagellum. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in X-linked spermatogenic failure 5 and synovial sarcoma. Orthologous to several human genes including SSX2 (SSX family member 2); SSX2B (SSX family member 2B); and SSX4 (SSX family member 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Low expression observed in reference dataset See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: X A1.1; X 4.01 cM

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	X	NC_000086.8 (8710233..8715846)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	X	NC_000086.7 (8843994..8849607)

Chromosome X - NC_000086.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by MGI

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	ISO Inferred from Sequence Orthology more info
located_in sperm flagellum	ISO Inferred from Sequence Orthology more info

General protein information

Go to the top of the page Help

Preferred Names: synovial sarcoma, X member B family member

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001081564.1 → NP_001075033.1 synovial sarcoma, X member B family member

Status: INFERRED

Source sequence(s)

AL731692

Consensus CDS

CCDS40849.1

UniProtKB/TrEMBL

A2AHC7, B7ZNZ3

Related

ENSMUSP00000111225.2, ENSMUST00000115563.2

Conserved Domains (3) summary

cd07765
Location:24 → 55

KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

smart00349
Location:23 → 76

KRAB; krueppel associated box

pfam09514
Location:137 → 158

SSXRD; SSXRD motif