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Vmn2r48 vomeronasal 2, receptor 48 [ Mus musculus (house mouse) ]

Gene ID: 625580, updated on 4-Jan-2025

Summary

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Official Symbol
Vmn2r48provided by MGI
Official Full Name
vomeronasal 2, receptor 48provided by MGI
Primary source
MGI:MGI:3647749
See related
Ensembl:ENSMUSG00000095914 AllianceGenome:MGI:3647749
Gene type
protein coding
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG625580
Summary
Predicted to enable G protein-coupled receptor activity. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Vmn2r48 in Genome Data Viewer
Location:
7 A1; 7 6.14 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (9661551..9687512, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (9927624..9953585, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 52 Neighboring gene ring finger protein 127 pseudogene Neighboring gene zinc finger protein 772 pseudogene Neighboring gene vomeronasal 2, receptor 49

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
vomeronasal receptor Vmn2r48

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105152.1 → NP_001098622.1  vomeronasal receptor Vmn2r48

    Status: INFERRED

    Source sequence(s)
    AC127423
    Consensus CDS
    CCDS52006.1
    UniProtKB/TrEMBL
    E9Q5D8, O35202
    Related
    ENSMUSP00000130631.2, ENSMUST00000165611.2
    Conserved Domains (3) summary
    pfam00003
    Location:602 → 836
    7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR
    pfam07562
    Location:516 → 567
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cl10011
    Location:46 → 506
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    9661551..9687512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017322435.1 → XP_017177924.1  vomeronasal receptor Vmn2r48 isoform X1

    UniProtKB/TrEMBL
    O35202
    Conserved Domains (3) summary
    cd15283
    Location:551 → 786
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    pfam07562
    Location:512 → 549
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cl10011
    Location:43 → 503
    Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
Nucleotide Protein
Heading Accession and Version

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