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Samt1c spermatogenesis associated multipass transmembrane protein 1c [ Mus musculus (house mouse) ]

Gene ID: 625650, updated on 27-Nov-2024

Summary

Official Symbol
Samt1cprovided by MGI
Official Full Name
spermatogenesis associated multipass transmembrane protein 1cprovided by MGI
Primary source
MGI:MGI:3710528
See related
Ensembl:ENSMUSG00000096867 AllianceGenome:MGI:3710528
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm10057
Expression
Restricted expression toward testis adult (RPKM 22.6) See more
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Genomic context

See Samt1c in Genome Data Viewer
Location:
X F3; X 72.38 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (152826982..152838037, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (154043986..154055041, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated multipass transmembrane protein 1 Neighboring gene spermatogenesis associated multipass transmembrane protein 1b Neighboring gene predicted gene 15143 Neighboring gene predicted pseudogene 5947

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC625650

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243016.1NP_001229945.1  uncharacterized protein LOC625650

    See identical proteins and their annotated locations for NP_001229945.1

    Status: VALIDATED

    Source sequence(s)
    BX005465, BX322668
    Consensus CDS
    CCDS57781.1
    UniProtKB/TrEMBL
    A2BED8
    Related
    ENSMUSP00000116409.2, ENSMUST00000144098.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    152826982..152838037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017318588.1XP_017174077.1  uncharacterized protein LOC625650 isoform X1