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HMPREF9452_RS09285 site-specific integrase [ Collinsella tanakaei YIT 12063 ]

Gene ID: 62759542, updated on 3-Dec-2024

Summary

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Gene symbol
HMPREF9452_RS09285
Gene description
site-specific integrase
Locus tag
HMPREF9452_RS09285
Gene type
protein coding
Organism
Collinsella tanakaei YIT 12063 (strain: YIT 12063, nat-host: Homo sapiens, type-material: type strain of Collinsella tanakaei)
Lineage
Bacteria; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella
Old locus tag
HMPREF9452_01853
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Genomic context

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NZ_JH126473.1Genomic Context describing neighboring genes Neighboring gene helicase RepA family protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene helix-turn-helix transcriptional regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_JH126473.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
site-specific integrase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_JH126473.1 Reference assembly

    Range
    10645..11721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_004010380.1 MULTISPECIES: site-specific integrase [Terrabacteria group]

    See identical proteins and their annotated locations for WP_004010380.1

    UniProtKB/TrEMBL
    A0A0W7TLX5, A0A1C6D5D7, A0A1C6KG25, A0A1I5WDP6, A0A1Y3SVV4, A0A1Y3XJH2, A0A1Y4LRN6, A0A1Y4S921, A0A414NV06, A0A6N7X7C1, A0A7G9B2U1, A0A923L1E0, A0A9X8UI74, A0AAW6CNS0, E6M1A1, G1WKJ0
    Conserved Domains (3) summary
    cd01189
    Location:173 → 338
    INT_ICEBs1_C_like; C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons
    pfam14657
    Location:11 → 51
    Arm-DNA-bind_4; Arm DNA-binding domain
    pfam14659
    Location:59 → 113
    Phage_int_SAM_3; Phage integrase, N-terminal SAM-like domain
Nucleotide Protein
Heading Accession and Version

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