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Lce1k late cornified envelope 1K [ Mus musculus (house mouse) ]

Gene ID: 631101, updated on 27-Nov-2024

Summary

Official Symbol
Lce1kprovided by MGI
Official Full Name
late cornified envelope 1Kprovided by MGI
Primary source
MGI:MGI:3702534
See related
Ensembl:ENSMUSG00000095870 AllianceGenome:MGI:3702534
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm7055; Sprrl6
Expression
Restricted expression toward stomach adult (RPKM 35.3) See more
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Genomic context

See Lce1k in Genome Data Viewer
Location:
3 F1; 3 40.14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92713598..92715198, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92806291..92807891, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene late cornified envelope 1I Neighboring gene late cornified envelope 1J Neighboring gene STARR-seq mESC enhancer starr_08315 Neighboring gene keratinocyte expressed, proline-rich Neighboring gene late cornified envelope 1L

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
late cornified envelope 1K
Names
small proline rich-like 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001254760.1NP_001241689.1  late cornified envelope 1K

    See identical proteins and their annotated locations for NP_001241689.1

    Status: VALIDATED

    Source sequence(s)
    AI428007, AV072477, BY708617
    Consensus CDS
    CCDS57227.1
    UniProtKB/TrEMBL
    J3QP15
    Related
    ENSMUSP00000137052.2, ENSMUST00000179917.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92713598..92715198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)