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MIR4500HG MIR4500 host gene [ Homo sapiens (human) ]

Gene ID: 642345, updated on 17-Sep-2024

Summary

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Official Symbol
MIR4500HGprovided by HGNC
Official Full Name
MIR4500 host geneprovided by HGNC
Primary source
HGNC:HGNC:42773
See related
Ensembl:ENSG00000228824 AllianceGenome:HGNC:42773
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See MIR4500HG in Genome Data Viewer
Location:
13q31.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (87443987..87670963, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (86647822..86874567, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (88096242..88323218, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene ubiquitin B pseudogene 5 Neighboring gene uncharacterized LOC105370302 Neighboring gene MPRA-validated peak2098 silencer Neighboring gene LIN28A pseudogene 2 Neighboring gene formin-like protein 5 Neighboring gene NADH-ubiquinone oxidoreductase chain 5-like Neighboring gene microRNA 4500 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:88323353-88323854 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:88326279-88327478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:88328791-88329333 Neighboring gene uncharacterized LOC112268106 Neighboring gene SLIT and NTRK like family member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. An evaluation of the assembly of an approximately 15-Mb region on human chromosome 13q32-q33 linked to bipolar disorder and schizophrenia. Christian SL, et al. Genomics, 2002 May. PMID 11991713
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013
  3. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  4. SUMOylation of DDX39A Alters Binding and Export of Antiviral Transcripts to Control Innate Immunity. Shi P, et al. J Immunol, 2020 Jul 1. PMID 32393512

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • MIR4500 host gene (non-protein coding)
  • hCG1818123

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033829.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF339814, AL360267
    Related
    ENST00000436290.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    87443987..87670963 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    86647822..86874567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
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Research Materials