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ZNF143-AS1 ZNF143 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 644656, updated on 22-Oct-2024

Summary

Official Symbol
ZNF143-AS1provided by HGNC
Official Full Name
ZNF143 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:58073
See related
Ensembl:ENSG00000268403
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See ZNF143-AS1 in Genome Data Viewer
Location:
11p15.4
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (9459556..9460698, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (9544685..9545827, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (9481103..9482245, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene transmembrane protein 41B Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:9335331-9335848 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:9335849-9336364 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9339994-9340970 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:9340971-9341947 Neighboring gene proline rich 13 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:9372391-9372892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:9376493-9376993 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9377088-9377646 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9377647-9378203 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:9385258-9386457 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9406201-9406716 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:9420900-9421065 Neighboring gene importin 7 Neighboring gene Sharpr-MPRA regulatory region 11606 Neighboring gene small nucleolar RNA, H/ACA box 23 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9480928-9481563 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4406 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4407 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4408 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3126 Neighboring gene zinc finger protein 143 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3127 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9537259-9537799 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9551203-9551929 Neighboring gene CRISPRi-validated cis-regulatory element chr11.1006 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:9584901-9585400 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4409 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3128 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9594443-9595295 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3131 Neighboring gene small nucleolar RNA U13 Neighboring gene WEE1 G2 checkpoint kinase

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036539.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC004388, BC036621
    Related
    ENST00000596206.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    9459556..9460698 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    9544685..9545827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)