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GOLGA6L10 golgin A6 family like 10 [ Homo sapiens (human) ]

Gene ID: 647042, updated on 27-Nov-2024

Summary

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Official Symbol
GOLGA6L10provided by HGNC
Official Full Name
golgin A6 family like 10provided by HGNC
Primary source
HGNC:HGNC:37228
See related
Ensembl:ENSG00000278662 AllianceGenome:HGNC:37228
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GOLGA6L18
Expression
Broad expression in testis (RPKM 11.0), skin (RPKM 5.4) and 24 other tissues See more
Orthologs
all
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Genomic context

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See GOLGA6L10 in Genome Data Viewer
Location:
15q25.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (82339993..82349475, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (80204113..80213595, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (82632347..82641706, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ADAMTS7 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:82611132-82611632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:82611633-82612133 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:82621782-82622282 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:82622283-82622783 Neighboring gene dynamin 1 pseudogene 43 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82798244-82798745 Neighboring gene UBE2Q2 pseudogene 2 Neighboring gene ribosomal protein L9 pseudogene 8 Neighboring gene golgin A6 family like 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Non-erythroid beta spectrin interacting proteins and their effects on spectrin tetramerization. Sevinc A, et al. Cell Mol Biol Lett, 2011 Dec. PMID 21866423, Free PMC Article
  2. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
  3. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ61456, DKFZp686L1223

General protein information

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Preferred Names
golgin subfamily A member 6-like protein 10
Names
golgi autoantigen, golgin subfamily a, 6-like 10
golgin A6 family-like 18
putative golgin subfamily A member 6-like protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164465.3 → NP_001157937.2  golgin subfamily A member 6-like protein 10 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC243919
    Consensus CDS
    CCDS45325.2
    UniProtKB/Swiss-Prot
    A0A087WVD5, A6NI86, D6RB28
    UniProtKB/TrEMBL
    A0A0J9YW09
    Related
    ENSP00000479362.1, ENST00000610657.2
    Conserved Domains (1) summary
    pfam15070
    Location:83 → 219
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

  2. NM_001322400.1 → NP_001309329.1  golgin subfamily A member 6-like protein 10 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents an alternate allele located on the reference alternate locus, ALT_REF_LOCI_1.
    Source sequence(s)
    AC126339
    UniProtKB/Swiss-Prot
    H0YKK7
    UniProtKB/TrEMBL
    A0A0M3HER8
    Conserved Domains (1) summary
    pfam15070
    Location:83 → 219
    GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    82339993..82349475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187606.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    52777..59552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    80204113..80213595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006147.1: Suppressed sequence

    Description
    NG_006147.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6NI86.4 GenPept UniProtKB/Swiss-Prot:A6NI86

Gene LinkOut

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