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EFL1P1 elongation factor like GTPase 1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 648809, updated on 10-Dec-2024

Summary

Official Symbol
EFL1P1provided by HGNC
Official Full Name
elongation factor like GTPase 1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:31739
See related
AllianceGenome:HGNC:31739
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM42B; EFTUD1P1; HsT19321
Expression
Ubiquitous expression in testis (RPKM 1.8), small intestine (RPKM 1.2) and 25 other tissues See more
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Genomic context

See EFL1P1 in Genome Data Viewer
Location:
15q25.2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (84080187..84126601)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (81946140..81992540)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (84748939..84795353)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ADAMTS like 3 Neighboring gene uncharacterized LOC105370935 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9979 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9980 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_41714 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_41724 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:84710870-84712069 Neighboring gene stabilizer of axonemal microtubules 2 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6765 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:84821487-84821987 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:84824261-84824867 Neighboring gene uncharacterized LOC124903544 Neighboring gene UBE2Q2 pseudogene 16 Neighboring gene dynamin 1 pseudogene 41

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

General gene information

Markers

Other Names

  • elongation factor Tu GTP binding domain containing 1 pseudogene 1
  • elongation factor Tu GTP-binding domain-containing protein 1 pseudogene
  • family with sequence similarity 42, member B

Clone Names

  • FLJ13119

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036652.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC103965, DB064528, DY655563

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    84080187..84126601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791797.1 Reference GRCh38.p14 PATCHES

    Range
    685981..732369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    81946140..81992540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)