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Fubp1 far upstream element binding protein 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 654496, updated on 4-Jan-2025

Summary

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Official Symbol
Fubp1provided by RGD
Official Full Name
far upstream element binding protein 1provided by RGD
Primary source
RGD:1591892
See related
EnsemblRapid:ENSRNOG00000043370 AllianceGenome:RGD:1591892
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and mRNA binding activity. Involved in cellular response to lipopolysaccharide; positive regulation of Schwann cell migration; and response to nutrient levels. Predicted to be located in nucleoplasm. Predicted to be active in cytoplasm; nucleus; and synapse. Biomarker of sciatic neuropathy and traumatic brain injury. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human FUBP1 (far upstream element binding protein 1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Thymus (RPKM 308.1), Spleen (RPKM 233.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fubp1 in Genome Data Viewer
Location:
2q45
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (243819529..243846544)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (241159481..241186591)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (257425676..257452745)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S10 pseudogene Neighboring gene GIPC PDZ domain containing family, member 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member B4 Neighboring gene transmembrane protein 256, pseudogene 2 Neighboring gene nexilin (F actin binding protein) Neighboring gene mitoguardin 1 Neighboring gene uncharacterized LOC120100974

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Upregulation of far upstream element-binding protein 1 (FUBP1) promotes tumor proliferation and unfavorable prognosis in tongue squamous cell carcinoma. Chen Y, et al. Int J Biol Markers, 2020 Jun. PMID 32339054
  2. Far upstream element-binding protein 1(FUBP1) expression differs between human colorectal cancer and non-cancerous tissue. Jia MY, et al. Neoplasma, 2014. PMID 25030436
  3. Knockdown of FUSE binding protein 1 enhances the sensitivity of epithelial ovarian cancer cells to carboplatin. Zhang J, et al. Oncol Lett, 2017 Nov. PMID 29113212, Free PMC Article
  4. FBP1 promotes ovarian cancer development through the acceleration of cell cycle transition and metastasis. Xiong X, et al. Oncol Lett, 2018 Aug. PMID 30008853, Free PMC Article
  5. Overexpression of the far upstream element binding protein 1 in hepatocellular carcinoma is required for tumor growth. Rabenhorst U, et al. Hepatology, 2009 Oct. PMID 19637194, Free PMC Article

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
  
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cellular response to lipopolysaccharide IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within hematopoietic stem cell proliferation ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of Schwann cell migration IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
involved_in response to nutrient levels IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within somatic stem cell division ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  
is_active_in synapse ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
far upstream element-binding protein 1
Names
FBP
FUSE-binding protein 1
far upstream element (FUSE) binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037653.1 → NP_001032742.1  far upstream element-binding protein 1

    See identical proteins and their annotated locations for NP_001032742.1

    Status: PROVISIONAL

    Source sequence(s)
    BC107942
    UniProtKB/Swiss-Prot
    Q32PX7
    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (2) summary
    cd00105
    Location:97 → 159
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:603 → 617
    DUF1897; Domain of unknown function (DUF1897)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    243819529..243846544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039103100.2 → XP_038959028.1  far upstream element-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (5) summary
    pfam09005
    Location:628 → 642
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:115 → 189
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:203 → 272
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:293 → 360
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:393 → 464
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  2. XM_039103105.2 → XP_038959033.1  far upstream element-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (5) summary
    pfam09005
    Location:628 → 642
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:115 → 189
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:203 → 272
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:293 → 360
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:393 → 464
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  3. XM_039103102.2 → XP_038959030.1  far upstream element-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (5) summary
    pfam09005
    Location:625 → 639
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:115 → 189
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:203 → 272
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:293 → 360
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:393 → 464
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  4. XM_039103101.2 → XP_038959029.1  far upstream element-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (5) summary
    pfam09005
    Location:627 → 641
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:114 → 188
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:202 → 271
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:292 → 359
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:392 → 463
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  5. XM_039103103.2 → XP_038959031.1  far upstream element-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (5) summary
    pfam09005
    Location:624 → 638
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:114 → 188
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:202 → 271
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:292 → 359
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:392 → 463
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  6. XM_039103106.2 → XP_038959034.1  far upstream element-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (5) summary
    pfam09005
    Location:607 → 621
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:94 → 168
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:182 → 251
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:272 → 339
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:372 → 443
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  7. XM_039103108.2 → XP_038959036.1  far upstream element-binding protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (5) summary
    pfam09005
    Location:604 → 618
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:94 → 168
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:182 → 251
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:272 → 339
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:372 → 443
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  8. XM_039103107.2 → XP_038959035.1  far upstream element-binding protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A140TAJ3, A0A8I5YBV8
    Related
    ENSRNOP00000077531.1, ENSRNOT00000094623.2
    Conserved Domains (5) summary
    pfam09005
    Location:606 → 620
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:93 → 167
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:181 → 250
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:271 → 338
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:371 → 442
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  9. XM_063282511.1 → XP_063138581.1  far upstream element-binding protein 1 isoform X14

    UniProtKB/TrEMBL
    A0A140TAJ3
    Related
    ENSRNOP00000061544.5, ENSRNOT00000066199.5

  10. XM_039103109.2 → XP_038959037.1  far upstream element-binding protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A140TAJ3

  11. XM_063282512.1 → XP_063138582.1  far upstream element-binding protein 1 isoform X17

    UniProtKB/TrEMBL
    A0A140TAJ3

  12. XM_006233507.5 → XP_006233569.1  far upstream element-binding protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (2) summary
    cd00105
    Location:119 → 181
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:628 → 642
    DUF1897; Domain of unknown function (DUF1897)

  13. XM_006233511.5 → XP_006233573.1  far upstream element-binding protein 1 isoform X15

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (2) summary
    cd00105
    Location:119 → 181
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:628 → 642
    DUF1897; Domain of unknown function (DUF1897)

  14. XM_063282510.1 → XP_063138580.1  far upstream element-binding protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A140TAJ3

  15. XM_006233512.5 → XP_006233574.1  far upstream element-binding protein 1 isoform X18

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (2) summary
    cd00105
    Location:119 → 181
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:625 → 639
    DUF1897; Domain of unknown function (DUF1897)

  16. XM_063282508.1 → XP_063138578.1  far upstream element-binding protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A140TAJ3

  17. XM_039103111.2 → XP_038959039.1  far upstream element-binding protein 1 isoform X16

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (5) summary
    pfam09005
    Location:627 → 641
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:114 → 188
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:202 → 271
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:292 → 359
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:392 → 463
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  18. XM_039103110.2 → XP_038959038.1  far upstream element-binding protein 1 isoform X13

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (5) summary
    pfam09005
    Location:624 → 638
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:114 → 188
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:202 → 271
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:292 → 359
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:392 → 463
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  19. XM_039103113.2 → XP_038959041.1  far upstream element-binding protein 1 isoform X19

    UniProtKB/TrEMBL
    A0A140TAJ3
    Related
    ENSRNOP00000099811.1, ENSRNOT00000157036.1
    Conserved Domains (5) summary
    pfam09005
    Location:624 → 638
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:114 → 188
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:202 → 271
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:292 → 359
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:392 → 463
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  20. XM_008761555.4 → XP_008759777.1  far upstream element-binding protein 1 isoform X20

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (2) summary
    pfam09005
    Location:607 → 621
    DUF1897; Domain of unknown function (DUF1897)
    cl00098
    Location:94 → 168
    KH-I; K homology (KH) RNA-binding domain, type I

  21. XM_063282515.1 → XP_063138585.1  far upstream element-binding protein 1 isoform X24

    UniProtKB/TrEMBL
    A0A140TAJ3
    Related
    ENSRNOP00000111951.1, ENSRNOT00000135698.1

  22. XM_006233513.5 → XP_006233575.1  far upstream element-binding protein 1 isoform X22

    UniProtKB/TrEMBL
    A0A140TAJ3
    Related
    ENSRNOP00000103007.1, ENSRNOT00000132758.1
    Conserved Domains (2) summary
    pfam09005
    Location:604 → 618
    DUF1897; Domain of unknown function (DUF1897)
    cl00098
    Location:94 → 168
    KH-I; K homology (KH) RNA-binding domain, type I

  23. XM_063282517.1 → XP_063138587.1  far upstream element-binding protein 1 isoform X26

    UniProtKB/TrEMBL
    A0A140TAJ3

  24. XM_008761556.4 → XP_008759778.1  far upstream element-binding protein 1 isoform X21

    UniProtKB/TrEMBL
    A0A140TAJ3
    Conserved Domains (2) summary
    pfam09005
    Location:606 → 620
    DUF1897; Domain of unknown function (DUF1897)
    cl00098
    Location:93 → 167
    KH-I; K homology (KH) RNA-binding domain, type I

  25. XM_063282516.1 → XP_063138586.1  far upstream element-binding protein 1 isoform X25

    UniProtKB/TrEMBL
    A0A140TAJ3
    Related
    ENSRNOP00000095243.2, ENSRNOT00000110491.2

  26. XM_063282514.1 → XP_063138584.1  far upstream element-binding protein 1 isoform X23

    UniProtKB/TrEMBL
    A0A140TAJ3

RNA

  1. XR_005500367.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q32PX7.1 GenPept UniProtKB/Swiss-Prot:Q32PX7

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