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4732471J01Rik RIKEN cDNA 4732471J01 gene [ Mus musculus (house mouse) ]

Gene ID: 654804, updated on 22-Oct-2024

Summary

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Official Symbol
4732471J01Rikprovided by MGI
Official Full Name
RIKEN cDNA 4732471J01 geneprovided by MGI
Primary source
MGI:MGI:3603586
See related
Ensembl:ENSMUSG00000053714 AllianceGenome:MGI:3603586
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in subcutaneous fat pad adult (RPKM 31.3), mammary gland adult (RPKM 24.9) and 12 other tissues See more
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Genomic context

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See 4732471J01Rik in Genome Data Viewer
Location:
7 A3; 7 13.79 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (25076244..25265842)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (25376819..25566417)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene multiple EGF-like-domains 8 Neighboring gene STARR-positive B cell enhancer ABC_E2227 Neighboring gene STARR-positive B cell enhancer ABC_E11345 Neighboring gene cornifelin Neighboring gene lipase, hormone sensitive Neighboring gene C-X-C motif chemokine ligand 17 Neighboring gene STARR-seq mESC enhancer starr_18304 Neighboring gene RELT tumor necrosis factor receptor pseudogene Neighboring gene GrpE-like 2, mitochondrial pseudogene Neighboring gene chaperonin containing Tcp1, subunit 4 (delta) pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2818 Neighboring gene CEA cell adhesion molecule 1 Neighboring gene predicted gene, 38967 Neighboring gene STARR-seq mESC enhancer starr_18305 Neighboring gene CEA cell adhesion molecule 2 Neighboring gene STARR-seq mESC enhancer starr_18306 Neighboring gene STARR-seq mESC enhancer starr_18307 Neighboring gene STARR-positive B cell enhancer ABC_E8155 Neighboring gene predicted gene, 29918 Neighboring gene predicted gene, 38569

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015569.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC162443, AK043644, AK161422, BB613302

  2. NR_073027.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains alternate exon structure at the 5' and 3' ends, and uses two alternate splice sites in the central region, compared to variant 1.
    Source sequence(s)
    AC156992, AK043644, AK076372, BB006448
    Related
    ENSMUST00000206436.3

  3. NR_073028.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has entirely different exon structure, compared to variant 1, but it shares its 5' exon and has alternate subsequent exons, compared to variant 2.
    Source sequence(s)
    AK076372, AK078204
    Related
    ENSMUST00000205787.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    25076244..25265842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039540.1: Suppressed sequence

    Description
    NM_001039540.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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