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RPB5 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5) [ Scheffersomyces spartinae ]

Gene ID: 66118623, updated on 30-Nov-2023

Summary

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Gene symbol
RPB5
Gene description
DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5)
Locus tag
KQ657_005249
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Scheffersomyces spartinae (strain: ARV_011)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See RPB5 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_025065056.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase Neighboring gene uncharacterized protein Neighboring gene AAA ATPase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025065056.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5)
XP_043049593.1
  • COG:K
    BUSCO:EOG09264904
    EggNog:ENOG410PN0D

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_025065056.1 Reference assembly

    Range
    504213..504857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043195888.1 → XP_043049593.1  DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5) [Scheffersomyces spartinae]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A9P7VAI9
    Conserved Domains (1) summary
    cl29798
    Location:1 → 213
    RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain
Nucleotide Protein
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Gene LinkOut

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