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Krt88 keratin 88 [ Mus musculus (house mouse) ]

Gene ID: 66322, updated on 27-Nov-2024

Summary

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Official Symbol
Krt88provided by MGI
Official Full Name
keratin 88provided by MGI
Primary source
MGI:MGI:1913572
See related
Ensembl:ENSMUSG00000063971 AllianceGenome:MGI:1913572
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700011A15Rik
Summary
Orthologous to human KRT88P (keratin 88, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 59.2) See more
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Genomic context

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See Krt88 in Genome Data Viewer
Location:
15 F2; 15 56.9 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (101345605..101351806)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (101447724..101453925)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_39796 Neighboring gene keratin 7 Neighboring gene keratin 87 Neighboring gene keratin 81 Neighboring gene keratin 86

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
  2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (1) 

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein LOC66322

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025487.3 → NP_079763.1  uncharacterized protein LOC66322

    See identical proteins and their annotated locations for NP_079763.1

    Status: VALIDATED

    Source sequence(s)
    BB019987, BC048463, CN841812
    Consensus CDS
    CCDS37217.1
    UniProtKB/TrEMBL
    Q9CPR6
    Related
    ENSMUSP00000023781.8, ENSMUST00000023781.9
    Conserved Domains (1) summary
    pfam00038
    Location:3 → 109
    Filament; Intermediate filament protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    101345605..101351806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006521258.4 → XP_006521321.1  uncharacterized protein LOC66322 isoform X1

    Conserved Domains (1) summary
    pfam00038
    Location:1 → 113
    Filament; Intermediate filament protein
Nucleotide Protein Strain
Heading Accession and Version

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