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1700029F12Rik RIKEN cDNA 1700029F12 gene [ Mus musculus (house mouse) ]

Gene ID: 66479, updated on 27-Nov-2024

Summary

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Official Symbol
1700029F12Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700029F12 geneprovided by MGI
Primary source
MGI:MGI:1913729
See related
Ensembl:ENSMUSG00000052075 AllianceGenome:MGI:1913729
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 626.8) See more
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Genomic context

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See 1700029F12Rik in Genome Data Viewer
Location:
13 D1; 13 50.66 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (97158372..97171762, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (97021864..97035254, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase) Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:97735001-97735184 Neighboring gene predicted gene, 41027 Neighboring gene predicted gene, 41028 Neighboring gene STARR-seq mESC enhancer starr_35359 Neighboring gene family with sequence similarity 169, member A Neighboring gene STARR-seq mESC enhancer starr_35363 Neighboring gene proteolipid protein 2, retrotransposed Neighboring gene STARR-positive B cell enhancer ABC_E3094 Neighboring gene NSA2 ribosome biogenesis homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC66479

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080777.2 → NP_001074246.1  uncharacterized protein LOC66479 isoform 1

    See identical proteins and their annotated locations for NP_001074246.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AC154558, AK006036, AK006488, BY461519, CF106098
    UniProtKB/TrEMBL
    Q810S0

  2. NM_001284205.1 → NP_001271134.1  uncharacterized protein LOC66479 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The encoded isoform (3) is shorter, compared to isoform 1.
    Source sequence(s)
    AC154558, AK006036, AK006488, BY461519, CF106098
    UniProtKB/TrEMBL
    Q9CRB4

  3. NM_025585.3 → NP_079861.1  uncharacterized protein LOC66479 isoform 2

    See identical proteins and their annotated locations for NP_079861.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame exon in the 3'-terminal exon, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
    Source sequence(s)
    AC154558, AK006036, AK006488, BY461519
    Consensus CDS
    CCDS36755.1
    UniProtKB/TrEMBL
    Q9CRB4
    Related
    ENSMUSP00000088938.5, ENSMUST00000091377.5

RNA

  1. NR_104276.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate 5'-terminal exon and an alternate splice site at the 3'-terminal exon, compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
    Source sequence(s)
    AC154558, AK006036, AK006488, BY461519

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    97158372..97171762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011244689.3 → XP_011242991.1  uncharacterized protein LOC66479 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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