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LAB52_RS00575 HNH endonuclease [ Lactobacillus amylovorus GRL1118 ]

Gene ID: 66522909, updated on 3-Apr-2024

Summary

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Gene symbol
LAB52_RS00575
Gene description
HNH endonuclease
Locus tag
LAB52_RS00575
Gene type
protein coding
Organism
Lactobacillus amylovorus GRL1118 (strain: GRL1118, nat-host: pig)
Lineage
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
Old locus tag
LAB52_00595
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Genomic context

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Sequence:
NC_017470.1 (113556..114470)

NC_017470.1Genomic Context describing neighboring genes Neighboring gene OFA family MFS transporter Neighboring gene YfbR-like 5'-deoxynucleotidase Neighboring gene DUF805 domain-containing protein Neighboring gene amino acid ABC transporter ATP-binding protein Neighboring gene ABC transporter permease subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_017470.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Biochemical characterization of a thermostable HNH endonuclease from deep-sea thermophilic bacteriophage GVE2. Zhang L, et al. Appl Microbiol Biotechnol, 2016 Sep. PMID 27131500
  2. Self-splicing group I and group II introns encode homologous (putative) DNA endonucleases of a new family. Gorbalenya AE. Protein Sci, 1994 Jul. PMID 7920259, Free PMC Article
  3. Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns. Shub DA, et al. Trends Biochem Sci, 1994 Oct. PMID 7817395
  4. Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family. Dalgaard JZ, et al. Nucleic Acids Res, 1997 Nov 15. PMID 9358175, Free PMC Article
  5. Genome sequence of Lactobacillus amylovorus GRL1118, isolated from pig ileum. Kant R, et al. J Bacteriol, 2011 Jun. PMID 21478337, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
HNH endonuclease

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_017470.1 Reference assembly

    Range
    113556..114470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_013436959.1 MULTISPECIES: HNH endonuclease [Lactobacillus]

    See identical proteins and their annotated locations for WP_013436959.1

    UniProtKB/TrEMBL
    A0A7X7BS39, E4SJQ8, F0THY8
    Conserved Domains (1) summary
    cd00085
    Location:150 → 199
    HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...
Nucleotide Protein
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