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1700017N19Rik RIKEN cDNA 1700017N19 gene [ Mus musculus (house mouse) ]

Gene ID: 66605, updated on 27-Nov-2024

Summary

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Official Symbol
1700017N19Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700017N19 geneprovided by MGI
Primary source
MGI:MGI:1913855
See related
Ensembl:ENSMUSG00000056912 AllianceGenome:MGI:1913855
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be involved in poly(A)+ mRNA export from nucleus. Orthologous to human C12orf50 (chromosome 12 open reading frame 50). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 20.9) See more
Orthologs
human all
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Genomic context

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See 1700017N19Rik in Genome Data Viewer
Location:
10 D1; 10 51.51 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (100426346..100454257)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (100590484..100618395)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_27735 Neighboring gene transmembrane and tetratricopeptide repeat containing 3 Neighboring gene centrosomal protein 290 Neighboring gene STARR-positive B cell enhancer mm9_chr10:100051814-100052115 Neighboring gene STARR-positive B cell enhancer mm9_chr10:100092429-100092730 Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1 Neighboring gene STARR-seq mESC enhancer starr_27736 Neighboring gene STARR-seq mESC enhancer starr_27737 Neighboring gene predicted gene, 35722 Neighboring gene STARR-seq mESC enhancer starr_27738 Neighboring gene STARR-seq mESC enhancer starr_27739 Neighboring gene STARR-seq mESC enhancer starr_27740 Neighboring gene methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. KCTD13-mediated ubiquitination and degradation of GluN1 regulates excitatory synaptic transmission and seizure susceptibility. Gu J, et al. Cell Death Differ, 2023 Jul. PMID 37142655, Free PMC Article
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein C12orf50 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081246.2 → NP_001074715.1  uncharacterized protein C12orf50 homolog

    See identical proteins and their annotated locations for NP_001074715.1

    Status: VALIDATED

    Source sequence(s)
    AC153501
    Consensus CDS
    CCDS36047.1
    UniProtKB/TrEMBL
    A0A087WRQ1, D3YX67
    Related
    ENSMUSP00000042828.7, ENSMUST00000041162.13
    Conserved Domains (2) summary
    pfam15663
    Location:1 → 46
    zf-CCCH_3; Zinc-finger containing family
    pfam17732
    Location:66 → 415
    DUF5571; Family of unknown function (DUF5571)

  2. NM_001429354.1 → NP_001416283.1  uncharacterized protein C12orf50 homolog

    Status: VALIDATED

    Source sequence(s)
    AC153501
    UniProtKB/TrEMBL
    D3YX67

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    100426346..100454257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030245218.1 → XP_030101078.1  uncharacterized protein C12orf50 homolog isoform X1

    Related
    ENSMUSP00000151731.2, ENSMUST00000218464.2
    Conserved Domains (2) summary
    pfam15663
    Location:1 → 46
    zf-CCCH_3; Zinc-finger containing family
    pfam17732
    Location:66 → 415
    DUF5571; Family of unknown function (DUF5571)

  2. XM_006513956.3 → XP_006514019.1  uncharacterized protein C12orf50 homolog isoform X1

    See identical proteins and their annotated locations for XP_006514019.1

    UniProtKB/TrEMBL
    A0A087WRQ1, D3YX67
    Conserved Domains (2) summary
    pfam15663
    Location:1 → 46
    zf-CCCH_3; Zinc-finger containing family
    pfam17732
    Location:66 → 415
    DUF5571; Family of unknown function (DUF5571)

  3. XM_017314058.2 → XP_017169547.1  uncharacterized protein C12orf50 homolog isoform X2

    UniProtKB/TrEMBL
    A0A087WRQ1
    Related
    ENSMUSP00000141032.2, ENSMUST00000187119.7
    Conserved Domains (2) summary
    pfam15663
    Location:1 → 46
    zf-CCCH_3; Zinc-finger containing family
    pfam17732
    Location:66 → 414
    DUF5571; Family of unknown function (DUF5571)

  4. XM_006513955.3 → XP_006514018.1  uncharacterized protein C12orf50 homolog isoform X1

    See identical proteins and their annotated locations for XP_006514018.1

    UniProtKB/TrEMBL
    A0A087WRQ1, D3YX67
    Conserved Domains (2) summary
    pfam15663
    Location:1 → 46
    zf-CCCH_3; Zinc-finger containing family
    pfam17732
    Location:66 → 415
    DUF5571; Family of unknown function (DUF5571)
Nucleotide Protein Strain
Heading Accession and Version

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