H3f5 H3.5 histone [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: H3f5provided by MGI
Official Full Name: H3.5 histoneprovided by MGI
Primary source: MGI:MGI:3651714
See related: AllianceGenome:MGI:3651714
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: H3mm12; Gm12657
Summary: Predicted to enable nucleosomal DNA binding activity. Predicted to be involved in positive regulation of cell growth. Predicted to be located in euchromatin and nucleoplasm. Orthologous to human H3-5 (H3.5 histone). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in ovary adult (RPKM 34.3), duodenum adult (RPKM 7.5) and 1 other tissue See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 4 C5; 4 43.34 cM

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	4	NC_000070.7 (94481887..94488556)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	4	NC_000070.6 (94593650..94600319)

Chromosome 4 - NC_000070.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

H3f3a (e-PCR), detects polymorphism
- UniSTS:525689

WI-6046 (e-PCR)
- UniSTS:73465

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables nucleosomal DNA binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in positive regulation of cell growth	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in euchromatin	ISO Inferred from Sequence Orthology more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info

General protein information

Go to the top of the page Help

Preferred Names: uncharacterized protein LOC667250

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001081019.1 → NP_001074488.1 uncharacterized protein LOC667250

See identical proteins and their annotated locations for NP_001074488.1

Status: PREDICTED

Source sequence(s)

AL732597

UniProtKB/TrEMBL

A1L0V4

Conserved Domains (2) summary

PTZ00018
Location:1 → 136

PTZ00018; histone H3; Provisional

pfam00125
Location:1 → 132

Histone; Core histone H2A/H2B/H3/H4