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rpmE 50S ribosomal protein L31 [ Pantoea agglomerans ]

Gene ID: 66824165, updated on 3-Dec-2024

Summary

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Gene symbol
rpmE
Gene description
50S ribosomal protein L31
Locus tag
I6L77_RS03275
Gene type
protein coding
Organism
Pantoea agglomerans (strain: FDAARGOS 1447, culture-collection: DSM:3493, type-material: type strain of Pantoea agglomerans)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea agglomerans group
Old locus tag
I6L77_03275
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Genomic context

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NZ_CP077366.1Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional regulator CytR Neighboring gene primosomal protein N' Neighboring gene met regulon transcriptional regulator MetJ Neighboring gene cystathionine gamma-synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP077366.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete Genome Sequence of Pantoea agglomerans TH81, Isolated from a Permafrost Thaw Gradient. Humphrey J, et al. Microbiol Resour Announc, 2019 Jan. PMID 30637402, Free PMC Article
  2. Liberation of zinc-containing L31 (RpmE) from ribosomes by its paralogous gene product, YtiA, in Bacillus subtilis. Akanuma G, et al. J Bacteriol, 2006 Apr. PMID 16547061, Free PMC Article
  3. Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Makarova KS, et al. Genome Biol, 2001. PMID 11574053, Free PMC Article
  4. Zinc is a key factor in controlling alternation of two types of L31 protein in the Bacillus subtilis ribosome. Nanamiya H, et al. Mol Microbiol, 2004 Apr. PMID 15049826

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
50S ribosomal protein L31

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP077366.1 Reference assembly

    Range
    731016..731231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_003851227.1 MULTISPECIES: 50S ribosomal protein L31 [Pantoea]

    See identical proteins and their annotated locations for WP_003851227.1

    UniProtKB/TrEMBL
    A0A1I5HY00, A0A1X1BZE7, A0A2A7V7R9, A0A2V1YI80, A0A506QJ77, A0A5M7LG83, A0A5M7PYV4, A0A653NBI8, A0AAD2Y0P4, A0AAF0I6X1, A0AAN1NMY3, A0AAX1DQS2, E0M3X9
    Conserved Domains (1) summary
    PRK00019
    Location:1 → 71
    rpmE; 50S ribosomal protein L31; Reviewed
Nucleotide Protein
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