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Dmrtc1c2 DMRT-like family C1c2 [ Mus musculus (house mouse) ]

Gene ID: 668357, updated on 4-Jan-2025

Summary

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Official Symbol
Dmrtc1c2provided by MGI
Official Full Name
DMRT-like family C1c2provided by MGI
Primary source
MGI:MGI:3802967
See related
Ensembl:ENSMUSG00000067561 AllianceGenome:MGI:3802967
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in reproductive system. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in testis adult (RPKM 1.7) and placenta adult (RPKM 1.4) See more
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Genomic context

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See Dmrtc1c2 in Genome Data Viewer
Location:
X D; X 45.76 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (101891237..101900813, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (102847631..102857207, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene DMRT-like family C1b pseudogene Neighboring gene DMRT-like family pseudogene Neighboring gene RIKEN cDNA 1700031F05 gene Neighboring gene predicted pseudogene 9133

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Transcriptome analysis of mouse stem cells and early embryos. Sharov AA, et al. PLoS Biol, 2003 Dec. PMID 14691545, Free PMC Article
  2. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC151188, MGC151190

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
DMRT-like family C1c2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142690.2 → NP_001136162.1  DMRT-like family C1c2 isoform 1

    See identical proteins and their annotated locations for NP_001136162.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
    Source sequence(s)
    AL773565
    Consensus CDS
    CCDS53159.1
    UniProtKB/TrEMBL
    Q9D410
    Related
    ENSMUSP00000113033.2, ENSMUST00000120314.8
    Conserved Domains (1) summary
    pfam15791
    Location:164 → 231
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  2. NM_001310684.1 → NP_001297613.1  DMRT-like family C1c2 isoform 2

    See identical proteins and their annotated locations for NP_001297613.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation from a downstream start codon, compared to variant 1. The encoded protein (isoform 2) has a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AL773565, AV363673, BC116811, CN703741
    Consensus CDS
    CCDS81161.1
    UniProtKB/TrEMBL
    Q14AJ8
    Related
    ENSMUSP00000085206.5, ENSMUST00000087896.11
    Conserved Domains (1) summary
    pfam15791
    Location:158 → 226
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    101891237..101900813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528259.3 → XP_006528322.1  DMRT-like family C1c2 isoform X3

    See identical proteins and their annotated locations for XP_006528322.1

    UniProtKB/TrEMBL
    Q14AJ8
    Conserved Domains (1) summary
    pfam15791
    Location:158 → 226
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  2. XM_006528256.4 → XP_006528319.1  DMRT-like family C1c2 isoform X3

    See identical proteins and their annotated locations for XP_006528319.1

    UniProtKB/TrEMBL
    Q14AJ8
    Conserved Domains (1) summary
    pfam15791
    Location:158 → 226
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  3. XM_006528254.4 → XP_006528317.1  DMRT-like family C1c2 isoform X2

    See identical proteins and their annotated locations for XP_006528317.1

    Conserved Domains (1) summary
    pfam15791
    Location:166 → 234
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  4. XM_006528255.4 → XP_006528318.1  DMRT-like family C1c2 isoform X3

    See identical proteins and their annotated locations for XP_006528318.1

    UniProtKB/TrEMBL
    Q14AJ8
    Conserved Domains (1) summary
    pfam15791
    Location:158 → 226
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  5. XM_017318607.1 → XP_017174096.1  DMRT-like family C1c2 isoform X3

    UniProtKB/TrEMBL
    Q14AJ8
    Conserved Domains (1) summary
    pfam15791
    Location:158 → 226
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

  6. XM_011247665.2 → XP_011245967.1  DMRT-like family C1c2 isoform X1

    See identical proteins and their annotated locations for XP_011245967.1

    Conserved Domains (2) summary
    PHA03247
    Location:93 → 227
    PHA03247; large tegument protein UL36; Provisional
    pfam15791
    Location:179 → 247
    DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
Nucleotide Protein Strain
Heading Accession and Version

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