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2410002F23Rik RIKEN cDNA 2410002F23 gene [ Mus musculus (house mouse) ]

Gene ID: 668661, updated on 27-Nov-2024

Summary

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Official Symbol
2410002F23Rikprovided by MGI
Official Full Name
RIKEN cDNA 2410002F23 geneprovided by MGI
Primary source
MGI:MGI:1914226
See related
Ensembl:ENSMUSG00000045411 AllianceGenome:MGI:1914226
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be involved in response to virus. Predicted to be active in Golgi apparatus. Is expressed in central nervous system and retina. Orthologous to human C19orf48P (chromosome 19 open reading frame 48, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in limb E14.5 (RPKM 73.5), CNS E18 (RPKM 57.7) and 28 other tissues See more
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Genomic context

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See 2410002F23Rik in Genome Data Viewer
Location:
7 B3; 7 28.76 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (43896135..43901743)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (44246711..44252319)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_18789 Neighboring gene RIKEN cDNA 1700028J19 gene Neighboring gene kallikrein 1 Neighboring gene predicted gene, 36864 Neighboring gene STARR-positive B cell enhancer ABC_E1085 Neighboring gene predicted gene, 26247 Neighboring gene small nucleolar RNA, C/D box 88C Neighboring gene small nucleolar RNA, C/D box 88A Neighboring gene predicted gene, 23991 Neighboring gene acid phosphatase 4 Neighboring gene STARR-positive B cell enhancer ABC_E2233 Neighboring gene predicted gene 15517 Neighboring gene predicted gene, 18905

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  2. Genomic analysis of mouse retinal development. Blackshaw S, et al. PLoS Biol, 2004 Sep. PMID 15226823, Free PMC Article
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC27669, MGC69849

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in response to virus IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C19orf48 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025880.4 → NP_080156.2  uncharacterized protein C19orf48 homolog

    See identical proteins and their annotated locations for NP_080156.2

    Status: VALIDATED

    Source sequence(s)
    AC152939, AK049154, AW475775, BC059896
    Consensus CDS
    CCDS52228.1
    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Related
    ENSMUSP00000103583.2, ENSMUST00000055858.14
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    43896135..43901743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006541097.4 → XP_006541160.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_006541160.1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Related
    ENSMUSP00000140200.2, ENSMUST00000188382.2
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  2. XM_036153367.1 → XP_036009260.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  3. XM_030242906.2 → XP_030098766.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  4. XM_017312237.2 → XP_017167726.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  5. XM_006541093.4 → XP_006541156.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_006541156.1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  6. XM_006541095.3 → XP_006541158.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_006541158.1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Related
    ENSMUSP00000139694.2, ENSMUST00000188111.7
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  7. XM_006541090.4 → XP_006541153.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_006541153.1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Related
    ENSMUSP00000095894.3, ENSMUST00000084937.11
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  8. XM_030242905.2 → XP_030098765.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  9. XM_011250894.4 → XP_011249196.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_011249196.1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  10. XM_006541091.2 → XP_006541154.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_006541154.1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  11. XM_006541094.2 → XP_006541157.1  uncharacterized protein C19orf48 homolog isoform X1

    See identical proteins and their annotated locations for XP_006541157.1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  12. XM_030242909.1 → XP_030098769.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  13. XM_030242907.1 → XP_030098767.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)

  14. XM_030242908.1 → XP_030098768.1  uncharacterized protein C19orf48 homolog isoform X1

    UniProtKB/TrEMBL
    Q3T9M2, Q3TE80
    Related
    ENSMUSP00000071265.5, ENSMUST00000071296.11
    Conserved Domains (1) summary
    pfam17687
    Location:179 → 283
    DUF5535; Family of unknown function (DUF5535)
Nucleotide Protein Strain
Heading Accession and Version

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