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RhiXN_12292 Retrotransposable element Tf2 protein [ Rhizoctonia solani ]

Gene ID: 67034570, updated on 7-Dec-2023

Summary

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Gene symbol
RhiXN_12292
Gene description
Retrotransposable element Tf2 protein
Locus tag
RhiXN_12292
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rhizoctonia solani (strain: AG-1 IA, isolate: XN)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Cantharellales; Ceratobasidiaceae; Rhizoctonia
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Genomic context

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See RhiXN_12292 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
3
Sequence:
Chromosome: 15; NC_057384.1 (1614393..1619338, complement)

Chromosome 15 - NC_057384.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Reverse transcriptase from mobile element jockey protein Neighboring gene ribonuclease H-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057384.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Retrotransposable element Tf2 protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_057384.1 Reference assembly

    Range
    1614393..1619338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043332107.1 → XP_043186868.1  Retrotransposable element Tf2 protein [Rhizoctonia solani]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8H8PA93
    Conserved Domains (5) summary
    cd00303
    Location:445 → 528
    retropepsin_like; Retropepsins; pepsin-like aspartate proteases
    cd01647
    Location:631 → 807
    RT_LTR; Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of ...
    cd09274
    Location:901 → 1021
    RNase_HI_RT_Ty3; Ty3/Gypsy family of RNase HI in long-term repeat retroelements
    cl28914
    Location:1475 → 1524
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains
    cl29674
    Location:204 → 295
    Retrotrans_gag; Retrotransposon gag protein
Nucleotide Protein
Heading Accession and Version

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