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RhiXN_12300 Cys/Met metabolism PLP-dependent enzyme [ Rhizoctonia solani ]

Gene ID: 67034578, updated on 7-Dec-2023

Summary

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Gene symbol
RhiXN_12300
Gene description
Cys/Met metabolism PLP-dependent enzyme
Locus tag
RhiXN_12300
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rhizoctonia solani (strain: AG-1 IA, isolate: XN)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Cantharellales; Ceratobasidiaceae; Rhizoctonia
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Genomic context

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See RhiXN_12300 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
5
Sequence:
Chromosome: 15; NC_057384.1 (1646905..1648467, complement)

Chromosome 15 - NC_057384.1Genomic Context describing neighboring genes Neighboring gene glycoside hydrolase family 39 protein Neighboring gene enoyl-CoA hydratase/isomerase family protein Neighboring gene Cys/Met metabolism PLP-dependent enzyme Neighboring gene Ras-related protein Rab-4B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057384.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cystathionine gamma-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cysteine biosynthetic process via cystathionine IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transsulfuration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Cys/Met metabolism PLP-dependent enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_057384.1 Reference assembly

    Range
    1646905..1648467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043332115.1 → XP_043186876.1  Cys/Met metabolism PLP-dependent enzyme [Rhizoctonia solani]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8H3CQK3, A0A8H7LTK2
    Conserved Domains (1) summary
    cl18945
    Location:12 → 422
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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