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PGRP-SC2 Peptidoglycan recognition protein SC2 [ Drosophila simulans ]

Gene ID: 6733590, updated on 22-May-2024

Summary

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Gene symbol
PGRP-SC2
Gene description
Peptidoglycan recognition protein SC2
Locus tag
Dsimw501_GD10595
See related
EnsemblRapid:LOC6733590
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila simulans
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GD10595; GD10595-PA
Orthologs
fruit fly all
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Genomic context

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See PGRP-SC2 in Genome Data Viewer
Location:
chromosome: 2R
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Prin_Dsim_3.1 (GCF_016746395.2) 2R NC_052521.2 (6093370..6094019)
102 previous assembly Prin_Dsim_3.0 (GCF_016746395.1) 2R NC_052521.1 (6093340..6093999)

Chromosome 2R - NC_052521.2Genomic Context describing neighboring genes Neighboring gene mitochondrial sodium/calcium exchanger protein Neighboring gene peptidoglycan-recognition protein SC1a Neighboring gene tetraspanning orphan receptor Neighboring gene kelch-like protein 26 Neighboring gene protein germ cell-less Neighboring gene uncharacterized LOC6733594

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new test for selection applied to codon usage in Drosophila simulans and D. mauritiana. Llopart A, et al. J Mol Evol, 2008 Mar. PMID 18288436
  2. The evolution of parasite recognition genes in the innate immune system: purifying selection on Drosophila melanogaster peptidoglycan recognition proteins. Jiggins FM, et al. J Mol Evol, 2003 Nov. PMID 14738318, Free PMC Article
  3. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylmuramoyl-L-alanine amidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptidoglycan binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidoglycan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peptidoglycan-recognition protein SC2
Names
Dsim\GD10595
Dsim\GD10595-PA
Dsim\PGRP-SC2
Dsim\PGRP-SC2-PA
PGRP-SC2-PA
dsim_GLEANR_10577

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila simulans Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prin_Dsim_3.1

Genomic

  1. NC_052521.2 Reference Prin_Dsim_3.1

    Range
    6093370..6094019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002080608.4 → XP_002080644.1  peptidoglycan-recognition protein SC2

    See identical proteins and their annotated locations for XP_002080644.1

    UniProtKB/Swiss-Prot
    B2XZX6, B4QG79, Q2XY96, Q70PU1
    UniProtKB/TrEMBL
    A0A0J9R9H7
    Related
    XP_002080644.1, XM_002080608.4
    Conserved Domains (1) summary
    smart00701
    Location:21 → 162
    PGRP; Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q70PU1.1 GenPept UniProtKB/Swiss-Prot:Q70PU1

Gene LinkOut

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Molecular Biology Databases
Research Materials