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Kctd4 potassium channel tetramerisation domain containing 4 [ Mus musculus (house mouse) ]

Gene ID: 67516, updated on 27-Nov-2024

Summary

Official Symbol
Kctd4provided by MGI
Official Full Name
potassium channel tetramerisation domain containing 4provided by MGI
Primary source
MGI:MGI:1914766
See related
Ensembl:ENSMUSG00000046523 AllianceGenome:MGI:1914766
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2210017A09Rik
Summary
Predicted to be involved in protein homooligomerization. Is expressed in cerebral cortex subventricular zone; cortical plate; midbrain; and periaqueductal grey. Orthologous to human KCTD4 (potassium channel tetramerization domain containing 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in CNS E18 (RPKM 3.5), frontal lobe adult (RPKM 3.2) and 8 other tissues See more
Orthologs
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Genomic context

See Kctd4 in Genome Data Viewer
Location:
14 D3; 14 40.3 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (76192443..76202657)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (75955003..75965217)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52138 Neighboring gene general transcription factor IIF, polypeptide 2 Neighboring gene STARR-seq mESC enhancer starr_37153 Neighboring gene armadillo repeat containing 10 pseudogene Neighboring gene STARR-seq mESC enhancer starr_37154 Neighboring gene predicted gene, 53845 Neighboring gene predicted gene, 25517 Neighboring gene STARR-seq mESC enhancer starr_37156 Neighboring gene predicted gene, 36429

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in protein homooligomerization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
BTB/POZ domain-containing protein KCTD4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026214.4NP_080490.3  BTB/POZ domain-containing protein KCTD4

    See identical proteins and their annotated locations for NP_080490.3

    Status: VALIDATED

    Source sequence(s)
    AC122192
    Consensus CDS
    CCDS27282.1
    UniProtKB/Swiss-Prot
    Q8CCQ3, Q9CYK4, Q9D7X1
    Related
    ENSMUSP00000061734.3, ENSMUST00000050120.4
    Conserved Domains (1) summary
    cl02518
    Location:36123
    BTB; BTB/POZ domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    76192443..76202657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)