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Ccdc121 coiled-coil domain containing 121 [ Mus musculus (house mouse) ]

Gene ID: 67656, updated on 27-Nov-2024

Summary

Official Symbol
Ccdc121provided by MGI
Official Full Name
coiled-coil domain containing 121provided by MGI
Primary source
MGI:MGI:1914906
See related
Ensembl:ENSMUSG00000029138 AllianceGenome:MGI:1914906
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930548H24Rik
Summary
Orthologous to human CCDC121 (coiled-coil domain containing 121). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 3.0) See more
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Genomic context

See Ccdc121 in Genome Data Viewer
Location:
5 B1; 5 17.27 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (31643205..31645820)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (31485859..31488262)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36182 Neighboring gene STARR-seq mESC enhancer starr_12770 Neighboring gene zinc finger protein 512 Neighboring gene STARR-seq mESC enhancer starr_12771 Neighboring gene STARR-positive B cell enhancer ABC_E6315 Neighboring gene STARR-seq mESC enhancer starr_12772 Neighboring gene GPN-loop GTPase 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:31829068-31829342 Neighboring gene SPT7-like, STAGA complex gamma subunit

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • 4930548H24Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC67656

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026296.4NP_080572.1  uncharacterized protein LOC67656

    See identical proteins and their annotated locations for NP_080572.1

    Status: VALIDATED

    Source sequence(s)
    AC113276
    Consensus CDS
    CCDS19184.1
    UniProtKB/TrEMBL
    Q9D496
    Related
    ENSMUSP00000031020.3, ENSMUST00000031020.5
    Conserved Domains (1) summary
    pfam14988
    Location:202407
    DUF4515; Domain of unknown function (DUF4515)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    31643205..31645820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)