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2010106E10Rik RIKEN cDNA 2010106E10 gene [ Mus musculus (house mouse) ]

Gene ID: 67715, updated on 4-Jan-2025

Summary

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Official Symbol
2010106E10Rikprovided by MGI
Official Full Name
RIKEN cDNA 2010106E10 geneprovided by MGI
Primary source
MGI:MGI:1914965
See related
Ensembl:ENSMUSG00000025528 AllianceGenome:MGI:1914965
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in small intestine. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in large intestine adult (RPKM 23.9), small intestine adult (RPKM 10.3) and 1 other tissue See more
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Genomic context

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See 2010106E10Rik in Genome Data Viewer
Location:
X E1; X 48.76 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (111404971..111468040)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (112495274..112558343)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene ubinuclein 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47778 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene zinc finger protein 711 Neighboring gene premature ovarian failure 1B Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. C to U RNA editing mediated by APOBEC1 requires RNA-binding protein RBM47. Fossat N, et al. EMBO Rep, 2014 Aug. PMID 24916387, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC67715

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001168590.1 → NP_001162062.1  uncharacterized protein LOC67715 isoform 1 precursor

    See identical proteins and their annotated locations for NP_001162062.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK008319, AK017156, AV080583
    Consensus CDS
    CCDS53174.1
    UniProtKB/TrEMBL
    A2ANY3
    Related
    ENSMUSP00000109039.3, ENSMUST00000113412.3
    Conserved Domains (1) summary
    pfam02158
    Location:90 → 201
    Neuregulin; Neuregulin family

  2. NM_026333.4 → NP_080609.2  uncharacterized protein LOC67715 isoform 2 precursor

    See identical proteins and their annotated locations for NP_080609.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1, resulting in an isoform (2) that is shorter than isoform 1.
    Source sequence(s)
    AK017156, AV080583
    Consensus CDS
    CCDS30360.1
    UniProtKB/TrEMBL
    Q9D3Q9
    Related
    ENSMUSP00000026602.3, ENSMUST00000026602.9
    Conserved Domains (1) summary
    pfam02158
    Location:90 → 193
    Neuregulin; Neuregulin family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    111404971..111468040
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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