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Vom2r1 vomeronasal 2 receptor, 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 678740, updated on 27-Nov-2024

Summary

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Symbol
Vom2r1provided by RGD
Full Name
vomeronasal 2 receptor, 1provided by RGD
Primary source
RGD:1596944
See related
EnsemblRapid:ENSRNOG00000077957 AllianceGenome:RGD:1596944
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 4.6), Adrenal (RPKM 4.2) and 9 other tissues See more
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Genomic context

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See Vom2r1 in Genome Data Viewer
Location:
1p13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (164376..175234)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (775164..785885)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (111547190..111566674, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108352169 Neighboring gene vomeronasal 2, receptor 116 like, pseudogene 25 Neighboring gene zinc finger protein 431-like Neighboring gene uncharacterized LOC100910337

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
vomeronasal 2 receptor 1 precursor
Names
vomeronasal type-2 receptor 26-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099461.2 → NP_001092931.2  vomeronasal 2 receptor 1 precursor isoform 2 precursor

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I6GC46
    Conserved Domains (2) summary
    cd15283
    Location:578 → 829
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    cl10011
    Location:45 → 496
    Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily

  2. NM_001430504.1 → NP_001417433.1  vomeronasal 2 receptor 1 precursor isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I5ZWK7

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    164376..175234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039090201.2 → XP_038946129.1  vomeronasal 2 receptor 1 precursor isoform X1

    UniProtKB/TrEMBL
    A0A8I6GC46
    Conserved Domains (3) summary
    cd15283
    Location:582 → 833
    7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
    pfam07562
    Location:508 → 562
    NCD3G; Nine Cysteines Domain of family 3 GPCR
    cl10011
    Location:45 → 500
    Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily

  2. XM_063273158.1 → XP_063129228.1  vomeronasal 2 receptor 1 precursor isoform X2

    Related
    ENSRNOP00000103647.1, ENSRNOT00000173537.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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