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Tex13a testis expressed 13A [ Mus musculus (house mouse) ]

Gene ID: 67944, updated on 27-Nov-2024

Summary

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Official Symbol
Tex13aprovided by MGI
Official Full Name
testis expressed 13Aprovided by MGI
Primary source
MGI:MGI:1915194
See related
Ensembl:ENSMUSG00000071686 AllianceGenome:MGI:1915194
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700025D03Rik
Summary
Predicted to enable mRNA binding activity. Orthologous to several human genes including TEX13A (testis expressed 13A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 19.4) See more
Orthologs
human all
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Genomic context

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See Tex13a in Genome Data Viewer
Location:
X F1; X 60.22 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (137108907..137110357, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (138208158..138209580, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_47981 Neighboring gene predicted gene 8036 Neighboring gene interleukin 1 receptor accessory protein-like 2 Neighboring gene STARR-seq mESC enhancer starr_47982 Neighboring gene STARR-seq mESC enhancer starr_47983 Neighboring gene protein transport protein Sec61 subunit gamma pseudogene Neighboring gene predicted gene, 22057 Neighboring gene predicted gene, 23958

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Tex13a Optimizes Sperm Motility via Its Potential Roles in mRNA Turnover. Li Y, et al. Front Cell Dev Biol, 2021. PMID 34733855, Free PMC Article
  2. CRISPR/Cas9-mediated genome editing reveals 30 testis-enriched genes dispensable for male fertility in mice†. Lu Y, et al. Biol Reprod, 2019 Aug 1. PMID 31201419, Free PMC Article
  3. An abundance of X-linked genes expressed in spermatogonia. Wang PJ, et al. Nat Genet, 2001 Apr. PMID 11279525
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
testis-expressed protein 13A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026469.4 → NP_080745.2  testis-expressed protein 13A

    See identical proteins and their annotated locations for NP_080745.2

    Status: VALIDATED

    Source sequence(s)
    AL672205
    Consensus CDS
    CCDS41142.1
    UniProtKB/TrEMBL
    A2AFS9
    Related
    ENSMUSP00000094038.3, ENSMUST00000096314.3
    Conserved Domains (3) summary
    smart00547
    Location:347 → 369
    ZnF_RBZ; Zinc finger domain
    sd00025
    Location:349 → 368
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam15186
    Location:5 → 152
    TEX13; Testis-expressed sequence 13 protein family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    137108907..137110357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528604.2 → XP_006528667.1  testis-expressed protein 13A isoform X1

    Conserved Domains (3) summary
    smart00547
    Location:297 → 319
    ZnF_RBZ; Zinc finger domain
    sd00025
    Location:299 → 318
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam15186
    Location:53 → 102
    TEX13; Testis-expressed sequence 13 protein family

  2. XM_006528605.1 → XP_006528668.1  testis-expressed protein 13A isoform X2

    Conserved Domains (3) summary
    smart00547
    Location:228 → 250
    ZnF_RBZ; Zinc finger domain
    sd00025
    Location:230 → 249
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam15186
    Location:1 → 33
    TEX13; Testis-expressed sequence 13 protein family
Nucleotide Protein Strain
Heading Accession and Version

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