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Zfp455l1 zinc finger protein 455 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 680200, updated on 27-Nov-2024

Summary

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Official Symbol
Zfp455l1provided by RGD
Official Full Name
zinc finger protein 455 like 1provided by RGD
Primary source
RGD:1594231
See related
EnsemblRapid:ENSRNOG00000042308 AllianceGenome:RGD:1594231
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF429 (zinc finger protein 429). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 73.1), Thymus (RPKM 58.4) and 9 other tissues See more
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Genomic context

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See Zfp455l1 in Genome Data Viewer
Location:
1p11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (36755197..36773283, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (34866934..34944939, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (37802591..37818879, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene FAST kinase domains 3 Neighboring gene 5-methyltetrahydrofolate-homocysteine methyltransferase reductase Neighboring gene uncharacterized LOC134482589 Neighboring gene zinc finger protein 726 like, pseudogene 1 Neighboring gene U7 small nuclear RNA Neighboring gene protein NYNRIN-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC189378

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 455 like 1
Names
zinc finger protein 455-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001139491.2 → NP_001132963.1  zinc finger protein 455 like 1 isoform 2

    See identical proteins and their annotated locations for NP_001132963.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    B2RZ85
    Conserved Domains (4) summary
    smart00349
    Location:2 → 61
    KRAB; krueppel associated box
    COG5048
    Location:131 → 424
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:360 → 380
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd20908
    Location:104 → 152
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  2. NM_001419516.1 → NP_001406445.1  zinc finger protein 455 like 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    B2RZ85

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    36755197..36773283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063273570.1 → XP_063129640.1  zinc finger protein 455 like 1 isoform X1

    UniProtKB/TrEMBL
    B2RZ85

  2. XM_063273566.1 → XP_063129636.1  zinc finger protein 455 like 1 isoform X1

    UniProtKB/TrEMBL
    B2RZ85

  3. XM_063273561.1 → XP_063129631.1  zinc finger protein 455 like 1 isoform X1

    UniProtKB/TrEMBL
    B2RZ85
    Related
    ENSRNOP00000049291.3, ENSRNOT00000043747.6
Nucleotide Protein Strain
Heading Accession and Version

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