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2810025M15Rikl RIKEN cDNA 2810025M15 gene like [ Rattus norvegicus (Norway rat) ]

Gene ID: 680254, updated on 17-Aug-2024

Summary

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Official Symbol
2810025M15Riklprovided by RGD
Official Full Name
RIKEN cDNA 2810025M15 gene likeprovided by RGD
Primary source
RGD:1594177
See related
AllianceGenome:RGD:1594177
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Testes (RPKM 121.4), Lung (RPKM 63.8) and 9 other tissues See more
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Genomic context

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See 2810025M15Rikl in Genome Data Viewer
Location:
13q22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (72103047..72109673)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (69569485..69576111)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (75060189..75066815)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene RAS protein activator like 2 Neighboring gene serine and arginine rich splicing factor 6, pseudogene 2 Neighboring gene uncharacterized LOC134481517 Neighboring gene uncharacterized LOC134481518 Neighboring gene crystallin zeta like 2 Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial-like Neighboring gene SEC16 homolog B, endoplasmic reticulum export factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027983.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AW143964, BF387302, CR457757

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    72103047..72109673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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