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Paqr6 progestin and adipoQ receptor family member 6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 681021, updated on 27-Nov-2024

Summary

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Official Symbol
Paqr6provided by RGD
Official Full Name
progestin and adipoQ receptor family member 6provided by RGD
Primary source
RGD:1584722
See related
EnsemblRapid:ENSRNOG00000026059 AllianceGenome:RGD:1584722
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable signaling receptor activity. Predicted to be located in membrane. Orthologous to human PAQR6 (progestin and adipoQ receptor family member 6). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 60.0), Brain (RPKM 29.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Paqr6 in Genome Data Viewer
Location:
2q34
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (176131345..176136266)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (173832241..173838443)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (187736774..187741696)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 79 Neighboring gene SMG5 nonsense mediated mRNA decay factor Neighboring gene bone gamma-carboxyglutamate protein Neighboring gene polyamine-modulated factor 1 Neighboring gene uncharacterized LOC134485637

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. PAQR proteins: a novel membrane receptor family defined by an ancient 7-transmembrane pass motif. Tang YT, et al. J Mol Evol, 2005 Sep. PMID 16044242
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
membrane progestin receptor delta
Names
progestin and adipoQ receptor family member VI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191077.1 → NP_001178006.1  membrane progestin receptor delta

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000002
    UniProtKB/TrEMBL
    D4A4X5
    Related
    ENSRNOP00000075922.3, ENSRNOT00000092688.3
    Conserved Domains (1) summary
    pfam03006
    Location:43 → 271
    HlyIII; Haemolysin-III related

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    176131345..176136266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063282525.1 → XP_063138595.1  membrane progestin receptor delta isoform X2

  2. XM_017591101.3 → XP_017446590.2  membrane progestin receptor delta isoform X3

    UniProtKB/TrEMBL
    A0A0U1RS35, D4A4X5
    Related
    ENSRNOP00000075918.2, ENSRNOT00000092620.3
    Conserved Domains (1) summary
    pfam03006
    Location:58 → 286
    HlyIII; Haemolysin-III related

  3. XM_063282524.1 → XP_063138594.1  membrane progestin receptor delta isoform X1

  4. XM_039103116.2 → XP_038959044.1  membrane progestin receptor delta isoform X4

    UniProtKB/TrEMBL
    D4A4X5
    Conserved Domains (1) summary
    cl03831
    Location:75 → 259
    HlyIII; Haemolysin-III related

  5. XM_008761213.4 → XP_008759435.1  membrane progestin receptor delta isoform X6

    UniProtKB/TrEMBL
    A0A0U1RS38
    Related
    ENSRNOP00000075881.3, ENSRNOT00000092653.3
    Conserved Domains (1) summary
    cl03831
    Location:103 → 193
    HlyIII; Haemolysin-III related

  6. XM_039103118.1 → XP_038959046.1  membrane progestin receptor delta isoform X5

    UniProtKB/TrEMBL
    D4A4X5
    Conserved Domains (1) summary
    pfam03006
    Location:19 → 247
    HlyIII; Haemolysin-III related

  7. XM_017591103.3 → XP_017446592.1  membrane progestin receptor delta isoform X5

    UniProtKB/TrEMBL
    D4A4X5
    Related
    ENSRNOP00000030755.6, ENSRNOT00000036143.9
    Conserved Domains (1) summary
    pfam03006
    Location:19 → 247
    HlyIII; Haemolysin-III related

  8. XM_063282527.1 → XP_063138597.1  membrane progestin receptor delta isoform X7

  9. XM_063282528.1 → XP_063138598.1  membrane progestin receptor delta isoform X8

RNA

  1. XR_010063659.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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