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Map7d1 MAP7 domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 681287, updated on 4-Jan-2025

Summary

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Official Symbol
Map7d1provided by RGD
Official Full Name
MAP7 domain containing 1provided by RGD
Primary source
RGD:1597986
See related
EnsemblRapid:ENSRNOG00000010237 AllianceGenome:RGD:1597986
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Mtap7d1
Summary
Predicted to be involved in microtubule cytoskeleton organization. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAP7D1 (MAP7 domain containing 1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Heart (RPKM 199.2), Muscle (RPKM 165.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Map7d1 in Genome Data Viewer
Location:
5q36
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (143812467..143837597, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (138527944..138552537, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (144250416..144274981, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene thyroid hormone receptor associated protein 3 Neighboring gene uncharacterized LOC120103176 Neighboring gene uncharacterized LOC134486990 Neighboring gene trafficking protein particle complex subunit 3 Neighboring gene collagen type VIII alpha 2 chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in microtubule cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
MAP7 domain-containing protein 1
Names
microtubule-associated protein 7 domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109438.1 → NP_001102908.1  MAP7 domain-containing protein 1

    See identical proteins and their annotated locations for NP_001102908.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473968
    UniProtKB/TrEMBL
    A0A8I6AMK3, A6ISA0, D4A644
    Related
    ENSRNOP00000061878.1, ENSRNOT00000065871.3
    Conserved Domains (2) summary
    pfam05672
    Location:560 → 706
    MAP7; MAP7 (E-MAP-115) family
    pfam14303
    Location:93 → 211
    NAM-associated; No apical meristem-associated C-terminal domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    143812467..143837597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006238906.5 → XP_006238968.1  MAP7 domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A8I6AMK3
    Conserved Domains (2) summary
    pfam05672
    Location:520 → 666
    MAP7; MAP7 (E-MAP-115) family
    pfam14303
    Location:93 → 211
    NAM-associated; No apical meristem-associated C-terminal domain

  2. XM_006238904.5 → XP_006238966.1  MAP7 domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8I6AMK3
    Conserved Domains (2) summary
    pfam05672
    Location:552 → 698
    MAP7; MAP7 (E-MAP-115) family
    pfam14303
    Location:93 → 211
    NAM-associated; No apical meristem-associated C-terminal domain

  3. XM_039110767.2 → XP_038966695.1  MAP7 domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I6AMK3
    Conserved Domains (4) summary
    PTZ00121
    Location:132 → 223
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:331 → 574
    PHA03247; large tegument protein UL36; Provisional
    PRK14971
    Location:9 → 130
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05672
    Location:555 → 703
    MAP7; MAP7 (E-MAP-115) family

  4. XM_006238902.5 → XP_006238964.1  MAP7 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I6AMK3
    Conserved Domains (2) summary
    pfam05672
    Location:589 → 735
    MAP7; MAP7 (E-MAP-115) family
    pfam14303
    Location:93 → 211
    NAM-associated; No apical meristem-associated C-terminal domain

  5. XM_039110768.2 → XP_038966696.1  MAP7 domain-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8I6AMK3
    Conserved Domains (4) summary
    PTZ00121
    Location:132 → 223
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:297 → 540
    PHA03247; large tegument protein UL36; Provisional
    PRK14971
    Location:9 → 130
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam05672
    Location:521 → 669
    MAP7; MAP7 (E-MAP-115) family

  6. XM_006238903.5 → XP_006238965.1  MAP7 domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8I5Y1Q7, A0A8I6AMK3
    Related
    ENSRNOP00000077561.1, ENSRNOT00000108369.2
    Conserved Domains (2) summary
    pfam05672
    Location:555 → 701
    MAP7; MAP7 (E-MAP-115) family
    pfam14303
    Location:93 → 211
    NAM-associated; No apical meristem-associated C-terminal domain

  7. XM_006238901.5 → XP_006238963.1  MAP7 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZM56, A0A8I6AMK3
    Related
    ENSRNOP00000078898.1, ENSRNOT00000115338.2
    Conserved Domains (2) summary
    pfam05672
    Location:592 → 738
    MAP7; MAP7 (E-MAP-115) family
    pfam14303
    Location:93 → 211
    NAM-associated; No apical meristem-associated C-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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