These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

1. NM_026601.3 → NP_080877.3  putative hydroxypyruvate isomerase

   See identical proteins and their annotated locations for NP_080877.3

   Status: VALIDATED

   Description

   Transcript Variant: This variant (1) represents the coding variant that is expressed in some strains, including FBV/N, CZECHII, and CD-1.

   Source sequence(s)

   AA403499, BC024619

   UniProtKB/Swiss-Prot

   A2A9C1, Q497S8, Q8R1F5

   Conserved Domains (3) summary

   COG3622
   Location:3 → 266

   Hyi; Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]

   pfam01261
   Location:24 → 219

   AP_endonuc_2; Xylose isomerase-like TIM barrel

   cl02563
   Location:209 → 270

   PX_domain; The Phox Homology domain, a phosphoinositide binding module

RNA

1. NR_003946.2 RNA Sequence

   Status: VALIDATED

   Description

   Transcript Variant: This variant (2, non-coding) lacks an exon resulting in a frameshift. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD). This variant appears to only be expressed in the C57BL/6 strain, which also contains a short deletion in the alternatively spliced exon.

   Source sequence(s)

   AK020099, BE996398, CB952524, CK620463

   Related

   ENSMUST00000106393.8

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference GRCm39 C57BL/6J

Genomic

1. NC_000070.7 Reference GRCm39 C57BL/6J

   Range

   118217196..118219941

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)