Col26a1 collagen type XXVI alpha 1 chain [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Col26a1provided by RGD
Official Full Name: collagen type XXVI alpha 1 chainprovided by RGD
Primary source: RGD:1591401
See related: EnsemblRapid:ENSRNOG00000001422 AllianceGenome:RGD:1591401
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to act upstream of or within positive regulation of cell-substrate adhesion. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and extracellular matrix. Orthologous to human COL26A1 (collagen type XXVI alpha 1 chain). [provided by Alliance of Genome Resources, Jan 2025]
Expression: Biased expression in Kidney (RPKM 23.0), Muscle (RPKM 9.3) and 5 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 12q12

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	12	NC_086030.1 (25429362..25575205)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	12	NC_051347.1 (19792693..19938556)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	12	NC_005111.4 (22834866..22980603)

Chromosome 12 - NC_086030.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D12Mgh2 (e-PCR)
- UniSTS:119434

D12Got40 (e-PCR)
- UniSTS:115403

D12Got42 (e-PCR)
- UniSTS:113871

D12Got41 (e-PCR)
- UniSTS:115665

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
acts_upstream_of_or_within positive regulation of cell-substrate adhesion	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	ISO Inferred from Sequence Orthology more info
located_in endoplasmic reticulum	ISO Inferred from Sequence Orthology more info
located_in extracellular matrix	ISO Inferred from Sequence Orthology more info
located_in extracellular region	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: collagen alpha-1(XXVI) chain

Names: collagen, type XXVI, alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.