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Lce1b late cornified envelope 1B [ Mus musculus (house mouse) ]

Gene ID: 68720, updated on 27-Nov-2024

Summary

Official Symbol
Lce1bprovided by MGI
Official Full Name
late cornified envelope 1Bprovided by MGI
Primary source
MGI:MGI:1915970
See related
Ensembl:ENSMUSG00000027923 AllianceGenome:MGI:1915970
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sprrl5; 1110029C13Rik
Summary
Orthologous to human LCE2D (late cornified envelope 2D). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward stomach adult (RPKM 104.1) See more
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Genomic context

See Lce1b in Genome Data Viewer
Location:
3 F1; 3 40.14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92562957..92564233, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92655650..92656926, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35639 Neighboring gene predicted gene, 35699 Neighboring gene late cornified envelope 1A1 Neighboring gene ribosomal protein L13, pseudogene 4 Neighboring gene late cornified envelope 1A2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
late cornified envelope 1B
Names
small proline rich-like 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026822.1NP_081098.1  late cornified envelope 1B

    See identical proteins and their annotated locations for NP_081098.1

    Status: PROVISIONAL

    Source sequence(s)
    AK003951
    Consensus CDS
    CCDS17563.1
    UniProtKB/TrEMBL
    Q9D149
    Related
    ENSMUSP00000029531.4, ENSMUST00000029531.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92562957..92564233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)